Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01342 ATGGCCTTGGCTACAAACAAATTTAACGAGTCTTCTCAAATTGGAGAAGGGGGCTATGGGAAGGTTTATAAAGGTCATCTTCCTGATGGCACTGTTGTTGCCATAAAACGTTACATCATCGCAATCTTGTCTGTGTTTGGATACCGCGATGAAGAGGGTGAACAGATGTTGGTTTATGAATATATGCCAAAAGGAACACTAAGGGATCACCTTTCGGGTATATTTTGTGCTCTTGTTATCCAATTTTCTGTATTTTTTTCCATGAGGTTGAGGATTGCTTTAGGATCAGCCAAAGGTCTTTTATATCTACACACAGAAGCTAATCCTCCAATATTCCACCGATATGTCAAGGCCAGTAATATATTATTGGACTCTAGGTACACAGCAAAAGTTGCTGATTTTGGACTTTCACGGCTTGCCCCAGTTCCTGATACTGAAGGAAATGTACCTGGTCATGTATCAACAGTGGTAAAGGGGACCCCGGGTTTATAG 492 0.4126 MALATNKFNESSQIGEGGYGKVYKGHLPDGTVVAIKRYIIAILSVFGYRDEEGEQMLVYEYMPKGTLRDHLSGIFCALVIQFSVFFSMRLRIALGSAKGLLYLHTEANPPIFHRYVKASNILLDSRYTAKVADFGLSRLAPVPDTEGNVPGHVSTVVKGTPGL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01342 163 ProSiteProfiles Protein kinase domain profile. 8 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01342 163 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN ISOFORM 1 1 37 - -
Cca05g01342 163 SMART tyrkin_6 8 163 IPR020635 GO:0004713|GO:0006468
Cca05g01342 163 PANTHER RECEPTOR-LIKE PROTEIN 55 1 37 - -
Cca05g01342 163 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN ISOFORM 1 43 162 - -
Cca05g01342 163 PANTHER RECEPTOR-LIKE PROTEIN 55 43 162 - -
Cca05g01342 163 ProSitePatterns Protein kinases ATP-binding region signature. 14 36 IPR017441 GO:0005524
Cca05g01342 163 Pfam Protein tyrosine and serine/threonine kinase 42 140 IPR001245 GO:0004672|GO:0006468
Cca05g01342 163 Gene3D Transferase(Phosphotransferase) domain 1 1 163 - -
Cca05g01342 163 SUPERFAMILY Protein kinase-like (PK-like) 3 161 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01342 Cca-Chr5 31452945 31455471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01342 1 162 Receptor kinase-like Gene Family AT5G01950 55.435 9.33e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Cca05g01342 PK_Tyr_Ser-Thr 6.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01342 - - gmx:100777308 248.44