LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01340	ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCAATATCCTCATTTTTGCATTTATCGTTTTCTGAAAAAATGAAGTCAGAACCTGTATCAAAGTATTACCAGAAGGCAGAGAAAACGCTTAAGTTGTTGAAGCCGATTATTGATACAACTATTTTTTCTGATTTAGCTTCTAACGAAGTGCTTGGTAAGCTATTTGAGAAACTTGGTGTGGCTGTTGATGAGTTGAAGGAGCTTATTATGAGCTGGCATCCATTATCTAGCAAATTTTACTTTGTTATTCAAGTTGATCCCTTGGTATCAATAATTCAGACTTTGGGACTTGGCACTTTACAGCAGCTGAGTGCTTCACCGGAATGTCTTCCTGATAATTTGGGAAATGAAAAATCATCAACCATTAAAGAAGCTATTATGGAACAACTGGAAGGTGTAGGACAAAGTTTGGAGGTCCTGGAAAACATTGCTGAGAACCTAGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGTTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAATTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCAGTTGTATATCGTATGCATGAGCATCTTGTTACGCTTAAGCAAGCTCAGAACTCTATCCAAGTGAAAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGCGCTTTCATCAAGAACTGGATTGATTTAGGACTCAATGTTTGTCCAAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTAAAGGCATTAATTGCTAATTGGTGCGAATTGAATGATGTGAAACCTATTGATCCCATTAAGTCCAAAAACATAAACCTACCATCTCCCTCTCATGGGTCTATGGAGTCTGGTTTGGTCAAGGATTCGTCTGTTATAACTAGTGGTGAAATCCACCAAGAACGAGCTTCGACATTGCATTCTTCTTCAACTCTAGGTGGTTCCTTAAATGGCATGGTTAATGGGCAGCATGTGGATCTTGAAAGAATATCACCCACATGTTCAGATGATGGCTTTGTCAGCTCAGATGAAGGGAGTGTAGATTCAGTTGACCAATCATTAATGTCACCATCTAGAAGGGAATCCTGCAATGCCTTTAGCTCAGAACAATCTCAAAATGATGACAGAACTACTTCTGATAACAACAATGATCCTCTGCTGTCAACCAATCTAGATACTTCTGGGGAATTAAATTCAGGGCCAGATGCTGTTGCAATGCCAACTCGGCATAGAGAACCTGAGTTTTCACCCCAGTTGGCAGTGCCAAGGTCTCAAAGCCACACTGTGTGGCAACGGTCATCTGAGTGGTTTGTTCCTAGGATAGTGTCTACACCTCTTGAAACAAGAGCTGATCTTTCTGCTACCGAAACCCTGGTTCAGGAATTAGTGGAGCAGTTAAGGAGTGACTCTCTTGATGCTAAGCGAGAGGCGACAGCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCCAATTGTGGAGCCATTAGCTTATTAATTGATTTACTTGAATCAGCTGATACTACTGTCCAGGAAAATTGTGTTACAGCACTGCTTAACTTATCAATCAATGATAACAACAAAGCAGCTATTGCAAATGCCGGTGCAATTGAACCTTTGATTCATGTCCTAAAGACAGGGAGTTCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTGAACCACTAGTTGAGTTATTAGGGACTGGAACCCCTAGGGGGAAGAAAGATGCAGCCACTGCTTTGTTTAATCTGTCGATATCTCACGAAAACAAGGATCGGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTGGAGCTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCTACAATAGCACAAGGGAAAACAGAAATTGGTCAGCAAGGTGGAATTCCTGTTCTGGTCGAGGTTATTGAGCTGGGTTCCACTAGAGGGAAGGAGAATGCAGCGGCGGCTCTTCTTCATCTATGCTCAGACAATCACAGATATTTAAACACGGTGCTCCAAGAAGGAGCTGTGCCACCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTTAGAAGCCAGAGACATGGTAGGGCTGGGAGGGGTTGA	2322	0.4246	MEISLLKVLSDAISSFLHLSFSEKMKSEPVSKYYQKAEKTLKLLKPIIDTTIFSDLASNEVLGKLFEKLGVAVDELKELIMSWHPLSSKFYFVIQVDPLVSIIQTLGLGTLQQLSASPECLPDNLGNEKSSTIKEAIMEQLEGVGQSLEVLENIAENLGLRSNQEVLIEVVALEKLKENAEQIENTAEAEYIDQMISVVYRMHEHLVTLKQAQNSIQVKVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCELNDVKPIDPIKSKNINLPSPSHGSMESGLVKDSSVITSGEIHQERASTLHSSSTLGGSLNGMVNGQHVDLERISPTCSDDGFVSSDEGSVDSVDQSLMSPSRRESCNAFSSEQSQNDDRTTSDNNNDPLLSTNLDTSGELNSGPDAVAMPTRHREPEFSPQLAVPRSQSHTVWQRSSEWFVPRIVSTPLETRADLSATETLVQELVEQLRSDSLDAKREATAELRLLAKHNMDNRIVISNCGAISLLIDLLESADTTVQENCVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSSEAKENSAATLFSLSVTEENKIRIGRSGAIEPLVELLGTGTPRGKKDAATALFNLSISHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIAQGKTEIGQQGGIPVLVEVIELGSTRGKENAAAALLHLCSDNHRYLNTVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGRAGRG	773

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca05g01340	773	Pfam	Armadillo/beta-catenin-like repeat	602	640	IPR000225	GO:0005515
Cca05g01340	773	Pfam	Armadillo/beta-catenin-like repeat	643	680	IPR000225	GO:0005515
Cca05g01340	773	Pfam	Armadillo/beta-catenin-like repeat	560	599	IPR000225	GO:0005515
Cca05g01340	773	Pfam	Armadillo/beta-catenin-like repeat	521	558	IPR000225	GO:0005515
Cca05g01340	773	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	653	694	IPR000225	GO:0005515
Cca05g01340	773	Pfam	U-box domain	220	289	IPR003613	GO:0004842\|GO:0016567
Cca05g01340	773	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	530	572	IPR000225	GO:0005515
Cca05g01340	773	Gene3D	-	471	768	IPR011989	-
Cca05g01340	773	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	612	654	IPR000225	GO:0005515
Cca05g01340	773	PANTHER	U BOX DOMAIN-CONTAINING	11	769	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01340	Cca-Chr5	31425884	31431277	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g01340	180	773	U-box Gene Family	AT2G23140	59.091	0.0	669

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g01340	-		-	gmx:100777715	1199.5

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca01g00594	01	7511219	7520317	Cca05g01340	05	31425884	31431277	PCT

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