Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01340 ATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCAATATCCTCATTTTTGCATTTATCGTTTTCTGAAAAAATGAAGTCAGAACCTGTATCAAAGTATTACCAGAAGGCAGAGAAAACGCTTAAGTTGTTGAAGCCGATTATTGATACAACTATTTTTTCTGATTTAGCTTCTAACGAAGTGCTTGGTAAGCTATTTGAGAAACTTGGTGTGGCTGTTGATGAGTTGAAGGAGCTTATTATGAGCTGGCATCCATTATCTAGCAAATTTTACTTTGTTATTCAAGTTGATCCCTTGGTATCAATAATTCAGACTTTGGGACTTGGCACTTTACAGCAGCTGAGTGCTTCACCGGAATGTCTTCCTGATAATTTGGGAAATGAAAAATCATCAACCATTAAAGAAGCTATTATGGAACAACTGGAAGGTGTAGGACAAAGTTTGGAGGTCCTGGAAAACATTGCTGAGAACCTAGGTCTAAGGTCTAATCAAGAGGTCCTGATTGAGGTTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAATTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCAGTTGTATATCGTATGCATGAGCATCTTGTTACGCTTAAGCAAGCTCAGAACTCTATCCAAGTGAAAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCAGGGCAAACATATGAGCGCGCTTTCATCAAGAACTGGATTGATTTAGGACTCAATGTTTGTCCAAAGACACGTCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTAAAGGCATTAATTGCTAATTGGTGCGAATTGAATGATGTGAAACCTATTGATCCCATTAAGTCCAAAAACATAAACCTACCATCTCCCTCTCATGGGTCTATGGAGTCTGGTTTGGTCAAGGATTCGTCTGTTATAACTAGTGGTGAAATCCACCAAGAACGAGCTTCGACATTGCATTCTTCTTCAACTCTAGGTGGTTCCTTAAATGGCATGGTTAATGGGCAGCATGTGGATCTTGAAAGAATATCACCCACATGTTCAGATGATGGCTTTGTCAGCTCAGATGAAGGGAGTGTAGATTCAGTTGACCAATCATTAATGTCACCATCTAGAAGGGAATCCTGCAATGCCTTTAGCTCAGAACAATCTCAAAATGATGACAGAACTACTTCTGATAACAACAATGATCCTCTGCTGTCAACCAATCTAGATACTTCTGGGGAATTAAATTCAGGGCCAGATGCTGTTGCAATGCCAACTCGGCATAGAGAACCTGAGTTTTCACCCCAGTTGGCAGTGCCAAGGTCTCAAAGCCACACTGTGTGGCAACGGTCATCTGAGTGGTTTGTTCCTAGGATAGTGTCTACACCTCTTGAAACAAGAGCTGATCTTTCTGCTACCGAAACCCTGGTTCAGGAATTAGTGGAGCAGTTAAGGAGTGACTCTCTTGATGCTAAGCGAGAGGCGACAGCAGAACTTCGCCTTCTTGCTAAGCACAATATGGATAACCGAATTGTGATTTCCAATTGTGGAGCCATTAGCTTATTAATTGATTTACTTGAATCAGCTGATACTACTGTCCAGGAAAATTGTGTTACAGCACTGCTTAACTTATCAATCAATGATAACAACAAAGCAGCTATTGCAAATGCCGGTGCAATTGAACCTTTGATTCATGTCCTAAAGACAGGGAGTTCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCCTATCAGTTACTGAGGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTGAACCACTAGTTGAGTTATTAGGGACTGGAACCCCTAGGGGGAAGAAAGATGCAGCCACTGCTTTGTTTAATCTGTCGATATCTCACGAAAACAAGGATCGGATTGTGCAAGCCGGTGCTGTGAAACACCTTGTGGAGCTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTTGCTACAATAGCACAAGGGAAAACAGAAATTGGTCAGCAAGGTGGAATTCCTGTTCTGGTCGAGGTTATTGAGCTGGGTTCCACTAGAGGGAAGGAGAATGCAGCGGCGGCTCTTCTTCATCTATGCTCAGACAATCACAGATATTTAAACACGGTGCTCCAAGAAGGAGCTGTGCCACCTTTAGTAGCATTGTCACAATCAGGCACCCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTTAGAAGCCAGAGACATGGTAGGGCTGGGAGGGGTTGA 2322 0.4246 MEISLLKVLSDAISSFLHLSFSEKMKSEPVSKYYQKAEKTLKLLKPIIDTTIFSDLASNEVLGKLFEKLGVAVDELKELIMSWHPLSSKFYFVIQVDPLVSIIQTLGLGTLQQLSASPECLPDNLGNEKSSTIKEAIMEQLEGVGQSLEVLENIAENLGLRSNQEVLIEVVALEKLKENAEQIENTAEAEYIDQMISVVYRMHEHLVTLKQAQNSIQVKVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCELNDVKPIDPIKSKNINLPSPSHGSMESGLVKDSSVITSGEIHQERASTLHSSSTLGGSLNGMVNGQHVDLERISPTCSDDGFVSSDEGSVDSVDQSLMSPSRRESCNAFSSEQSQNDDRTTSDNNNDPLLSTNLDTSGELNSGPDAVAMPTRHREPEFSPQLAVPRSQSHTVWQRSSEWFVPRIVSTPLETRADLSATETLVQELVEQLRSDSLDAKREATAELRLLAKHNMDNRIVISNCGAISLLIDLLESADTTVQENCVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSSEAKENSAATLFSLSVTEENKIRIGRSGAIEPLVELLGTGTPRGKKDAATALFNLSISHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIAQGKTEIGQQGGIPVLVEVIELGSTRGKENAAAALLHLCSDNHRYLNTVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGRAGRG 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01340 773 Pfam Armadillo/beta-catenin-like repeat 602 640 IPR000225 GO:0005515
Cca05g01340 773 Pfam Armadillo/beta-catenin-like repeat 643 680 IPR000225 GO:0005515
Cca05g01340 773 Pfam Armadillo/beta-catenin-like repeat 560 599 IPR000225 GO:0005515
Cca05g01340 773 Pfam Armadillo/beta-catenin-like repeat 521 558 IPR000225 GO:0005515
Cca05g01340 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 653 694 IPR000225 GO:0005515
Cca05g01340 773 Pfam U-box domain 220 289 IPR003613 GO:0004842|GO:0016567
Cca05g01340 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 530 572 IPR000225 GO:0005515
Cca05g01340 773 Gene3D - 471 768 IPR011989 -
Cca05g01340 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 612 654 IPR000225 GO:0005515
Cca05g01340 773 PANTHER U BOX DOMAIN-CONTAINING 11 769 - -
Cca05g01340 773 SUPERFAMILY RING/U-box 209 297 - -
Cca05g01340 773 MobiDBLite consensus disorder prediction 331 350 - -
Cca05g01340 773 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Cca05g01340 773 SUPERFAMILY ARM repeat 487 762 IPR016024 -
Cca05g01340 773 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Cca05g01340 773 Coils Coil 163 193 - -
Cca05g01340 773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 295 IPR013083 -
Cca05g01340 773 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 571 613 IPR000225 GO:0005515
Cca05g01340 773 MobiDBLite consensus disorder prediction 362 439 - -
Cca05g01340 773 CDD RING-Ubox_PUB 224 266 IPR045210 -
Cca05g01340 773 SMART arm_5 642 681 IPR000225 GO:0005515
Cca05g01340 773 SMART arm_5 682 722 IPR000225 GO:0005515
Cca05g01340 773 SMART arm_5 723 764 IPR000225 GO:0005515
Cca05g01340 773 SMART arm_5 601 641 IPR000225 GO:0005515
Cca05g01340 773 SMART arm_5 519 559 IPR000225 GO:0005515
Cca05g01340 773 SMART arm_5 560 600 IPR000225 GO:0005515
Cca05g01340 773 MobiDBLite consensus disorder prediction 366 428 - -
Cca05g01340 773 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 769 - -
Cca05g01340 773 MobiDBLite consensus disorder prediction 331 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01340 Cca-Chr5 31425884 31431277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01340 180 773 U-box Gene Family AT2G23140 59.091 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01340 - - gmx:100777715 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00594 01 7511219 7520317 Cca05g01340 05 31425884 31431277 PCT