Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01335 ATGGCCTTTGTTCTCTCCATTTTGTTTTGCATGTTTGCCATTGCCTCTTCTCAGTTAACTTCAAATTGCTATGAATCAACATGTCCTCAAGCTCTCTCTATCATCAGATCCGCAGTCATTGGTGCAGTTGCCAAAGAGCATCGCATGGGTGCCTCATTGCTTCGTCTTCATTTCCATGACTGCTTTGTTAATGGATGTGATGCATCTGTTCTGTTAGATGACACTTCAACCTTTACTGGAGAGAAATCAGCTGGTGCAAATGTGAATTCTCTGAGAGGTTTTGAAGTAATTGATGACATTAAAACTAAAATAGAGGCTGCTTGTCCCGGAGTTGTTTCTTGTGCAGATATTCTAGCTATTGCTGCACGTGATTCCGTTGTTGCATTGGGAGGTCCATCGTGGAATGTTGGGTTAGGCAGAAGAGATTCAACCACAGCAAGTAAAGATGCTGCCACTAAGGATATTCCATCCCCACTAATGGATCTCAGTGCCCTTATATCTGCTTTTGCAAACAAGGGGTTTAACACTAAGGAAATGGTAGCTCTGGCAGGAGCTCATACAACGGGGCAAGCCAGGTGTCAGTTATTCCGAGGCAGGGTTTACAATGAAAGCAGCATTGAGTCAAACTTTGCAACATCACTCAAGTCAAACTGTCCAAGCACCGGTGGTGACACCAACCTTTCCCCACTTGATGTCACCACAAATGTTCTATTTGATAATGCTTATTTCAAGAATCTGATCAACAAAAAGGGACTTCTACATTCGGATCAACAGTTGTTCAGTGGTGGTTCTACAGATTCTCAGGTCACTGCCTATAGCAACGACCCTTCAGCTTTCTCTGCAGACTTTGCTAGTGCCATGGTCAAAATGGGTAACCTTAGCCCCTTAACAGGGAATAGTGGCCAGATTCGTACCAATTGCCGCAAGGTTAATTAA 936 0.437 MAFVLSILFCMFAIASSQLTSNCYESTCPQALSIIRSAVIGAVAKEHRMGASLLRLHFHDCFVNGCDASVLLDDTSTFTGEKSAGANVNSLRGFEVIDDIKTKIEAACPGVVSCADILAIAARDSVVALGGPSWNVGLGRRDSTTASKDAATKDIPSPLMDLSALISAFANKGFNTKEMVALAGAHTTGQARCQLFRGRVYNESSIESNFATSLKSNCPSTGGDTNLSPLDVTTNVLFDNAYFKNLINKKGLLHSDQQLFSGGSTDSQVTAYSNDPSAFSADFASAMVKMGNLSPLTGNSGQIRTNCRKVN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01335 311 Gene3D - 24 308 - -
Cca05g01335 311 Pfam Peroxidase 37 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 SUPERFAMILY Heme-dependent peroxidases 18 311 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Haem peroxidase superfamily signature 112 129 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Haem peroxidase superfamily signature 130 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Haem peroxidase superfamily signature 231 246 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 Gene3D Peroxidase, domain 2 156 290 - -
Cca05g01335 311 PRINTS Plant peroxidase signature 28 47 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 111 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 130 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 229 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 245 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PRINTS Plant peroxidase signature 285 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 PANTHER PEROXIDASE 72-RELATED 12 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 ProSiteProfiles Plant heme peroxidase family profile. 18 311 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca05g01335 311 CDD secretory_peroxidase 18 310 IPR033905 GO:0004601|GO:0042744
Cca05g01335 311 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601
Cca05g01335 311 PANTHER PEROXIDASE 12 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01335 Cca-Chr5 31374017 31376570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01335 14 311 Peroxidase AT5G05340 62.667 4.48e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01335 K00430 - gmx:100777191 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01335 05 31374017 31376570 Cca05g01335 05 31374017 31376570 ECH
Cca05g01335 05 31374017 31376570 Cca05g01661 05 35987677 35990083 ECH
Cca01g00599 01 7620329 7622775 Cca05g01335 05 31374017 31376570 PCT