Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01330 ATGCCTTCAACTGCCTTAAAATGGCTAAGCCTTGTTGGAATCATTTGGCTCCAAGCCATAAACGGCACAAACACCAATTTCCCTGCTTACTCCTCCCAGCTCAAGCAACTCCTTTCCCTGTCACAGTTTCAGCTCAATAACCTTGCTTTTGCCTCAGATGCTGGCAAACTCTTTGGCTTCTTTTCTGGCATGGCCACTACTTACCTCCCCTTTTGGCTTGTCCTCATGATAGGTTCAACTCTTGGCCTAGTTGGCTATGGTGTGCAATATCTCTTCATAACAAACCAAATCTCCTCCCTCTCCTATTGGCATGTCTTCTTGCTAACTGTTTTAGCAGGGAACAGCATTTGTTGGATTAACACTGTGTGCTATGTGATCACAATAAGAAACTTTCCATCTCATCGCCAAGTTGCTGTGGGGTTGACAACTAGCTACCAAGGGTTAAGTGCCAAGATTTACACCAGCATTGCTGATGTTGTTCCTGGACACAAAAAGGCTAAAACATTTCTACTTTTGAACTCAGTTTTGCCTATGTTAGTTTGCCTAATAGCAGCTCCCGTGGTCAGAGAATTTTATGTCACGAGACCTAGACACATGGATGTTGGATTTGTTGTTATGTTTGTTATCACAATTGCCACTGGAATATATGCTGTGGTGAGCAGCTTGCAATTTGTCTCGAGCAAAATATCTTCACTGGGTAGCTTTATTGGTGTTTTGGTAACCCTTTTGTTCCCTCTATTAGTTCCACTTTCCATGAAGATCAATTCACTAGTAGAGTCATGGCACAAAAATAGAGAAAACCAAAGAGTGTATCATTTTACTGCAGAGGAGAGTCAGAATGAAGAGAGGGAAGAAAATGAGGTGAAAGAGGGTGAAGATAGTATTAGTAGAGAAGTTCAATATGTAGGTATAAGAGAGGAAATAGGAGTAAAAGTGATGCTGAGAAGAGTAGATTTCTGGTTATATTTCCTTGTCTATTTGTTTGGTGCAACACTCGGTTTAGTGTTTCTGAATAACTTGGGACAAATAGCTGAATCCCGGGGTTACTCTAGCACTTCATCATTGGTGTCTTTGTCATCTTCTTTTGGCTTCTTTGGCCGTCTCATGCCATCTATTATGGACTACTTTTACAGGGGTAAGTGTACAATATCAAGACCAAGACCAGCTTCTATGGTAGCATTAATGGCTCCAATTGCAGGGGCATTTTTCTTACTTCTCAACAAAACTCATCTTGCTCTCTATGTTAGCACTGCCATTATTGGATTGTGCACTGGAGCCATCACTTCCATTTCTGTGTCCATCACCACTGAACTATTTGGAACCAAGAATTTCTCTGTGAATCATAATGTGGTGGTGGCCAACATCCCAGTGGGGTCCTTTCTGTTTGGATACTTGGCTGCAATTGTTTACCATAAAGGAGAGTATGAAGATGGAAAATGCATGGGCATGGAATGCTACAAAACCACTTTCATCATCTGGGGCTGCCTTTGTTTCTTTGGCACCTTTTTGGGTTTGATTTTACATGCTAGGACTCGCAAGTTTTACTCACAAACTATAGGATAA 1563 0.4152 MPSTALKWLSLVGIIWLQAINGTNTNFPAYSSQLKQLLSLSQFQLNNLAFASDAGKLFGFFSGMATTYLPFWLVLMIGSTLGLVGYGVQYLFITNQISSLSYWHVFLLTVLAGNSICWINTVCYVITIRNFPSHRQVAVGLTTSYQGLSAKIYTSIADVVPGHKKAKTFLLLNSVLPMLVCLIAAPVVREFYVTRPRHMDVGFVVMFVITIATGIYAVVSSLQFVSSKISSLGSFIGVLVTLLFPLLVPLSMKINSLVESWHKNRENQRVYHFTAEESQNEEREENEVKEGEDSISREVQYVGIREEIGVKVMLRRVDFWLYFLVYLFGATLGLVFLNNLGQIAESRGYSSTSSLVSLSSSFGFFGRLMPSIMDYFYRGKCTISRPRPASMVALMAPIAGAFFLLLNKTHLALYVSTAIIGLCTGAITSISVSITTELFGTKNFSVNHNVVVANIPVGSFLFGYLAAIVYHKGEYEDGKCMGMECYKTTFIIWGCLCFFGTFLGLILHARTRKFYSQTIG 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01330 520 Gene3D MFS general substrate transporter like domains 6 506 IPR036259 -
Cca05g01330 520 SUPERFAMILY MFS general substrate transporter 6 513 IPR036259 -
Cca05g01330 520 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 3 518 - -
Cca05g01330 520 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 518 - -
Cca05g01330 520 Pfam Nodulin-like 7 250 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01330 Cca-Chr5 31296352 31298468 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01330 1 517 Nodulin-like Gene Family AT2G30300 47.538 1.79e-156 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01330 - - gmx:100808034 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01330 05 31296352 31298468 Cca05g01330 05 31296352 31298468 ECH
Cca01g00602 01 7708925 7711358 Cca05g01330 05 31296352 31298468 PCT