Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01325 ATGCTATCAGGGGACATTCCTCCCAACCAAACCATTTACATCAAAAATCTCAACGAGAAGGTTAAGAAAGATGAATTGAAGAGATCTCTGTATTGCTTATTCTCTCAATATGGAAGAATTTTGGATGTTGTTGCTCTAAAGACTCCCAAGCTTCGAGGTCAGGCATGGGTTTGTTTCAGTGAAGTCACTGCTGCTAGTAATGCAGTGCGGCAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAAACAAAGTCAGACTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCAAGAGAAAAGAAAAAGAAACAAGAGGAAAAAGCTGAAAGAAAGAGGCGTGCTGAAGAAGCACAGCAATCTTCTGTAGCTAATGGAACACACAGTGCAAGTAATGGTGGCCCAACTGCATCATTCCGTCAAGGACCGGGTGCCCAAGAAACAGCTGCTCCTAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATTGAAGCAAAGCCCGGCATTGCATTTGTTGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTTCATGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 699 0.4149 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSSVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01325 232 CDD RRM1_U1A_like 11 88 - -
Cca05g01325 232 Gene3D - 4 118 IPR012677 -
Cca05g01325 232 MobiDBLite consensus disorder prediction 98 123 - -
Cca05g01325 232 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
Cca05g01325 232 MobiDBLite consensus disorder prediction 124 151 - -
Cca05g01325 232 Gene3D - 149 232 IPR012677 -
Cca05g01325 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Cca05g01325 232 MobiDBLite consensus disorder prediction 98 151 - -
Cca05g01325 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Cca05g01325 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Cca05g01325 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 232 - -
Cca05g01325 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 232 - -
Cca05g01325 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Cca05g01325 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Cca05g01325 232 Coils Coil 104 126 - -
Cca05g01325 232 CDD RRM2_U1A_like 156 228 - -
Cca05g01325 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01325 Cca-Chr5 31131600 31134834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01325 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.034 2.42e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01325 K11094 - gmx:100805822 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01325 05 31131600 31134834 Cca05g01325 05 31131600 31134834 ECH