Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01323 ATGGCATCATCTTCTGGTAGCTTAGACACCTCTGCAAGTGCAAACTCCTTCACCAACTTCACCTTCTCCACACACCCATTCATGACCACTTCCTTCTCTGACCTTCTTGCCTCTCCCATAGACAACAACAAGCCACAGGGCTTGTCTGAGAGAACCGCTTCTGGTATCCCCAAGTTCAAGTCCACACCACCACCTTCTTTGCCTCTCTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCCCCCGTTCTCCTTAACTCTTCCAACATTCTGCCGTCTCCGACAACTGGAGCGTTTGTTGCTCAGAGCTTCAATTGGAAGAGTGGTTCAGGGGGGAACCAGCAAATTGTCAAAGAAGAAGACAAAAGCTTCTCAAATTTCTCTTTCCAAACCCAACCAGGACCTACTGCTTCGTCCACAGCAACATTTCAATCTTCAAATGTCTCAGTTCAAACACAACAGCCATGGAGTTATCAGGAGGCCACTAAACAGGATAATTTTTCTTCTGGAAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCAGAGTTTTTCCCCTGAGATTGCTAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCGGATTATGGCAATTACCCCCCACAATCTCAGACCTTAAGCAGAAGGTCAGATGATGGGTACAATTGGAGGAAATATGGCCAAAAACAAGTGAAGGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAAAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCCACCAGGAGAAACTCATCATCTTCCTCTTCTCTTGCAATCCCTCCTTCAAATCCCATTAGCACTGAAATCCCAGATCAATCATATGCCACACATGGCAGTGGACAAATGGATTCAGCTGCCACCCCAGAAAACTCATCGATATCAATAGGAGATGATGATTTTGAGCAGAGTTCCCAAAAGTGTAAATCAGGAGGAGATGAGTTTGATGAAGATGAACCTGAGGCTAAAAGATGGTGA 1113 0.4429 MASSSGSLDTSASANSFTNFTFSTHPFMTTSFSDLLASPIDNNKPQGLSERTASGIPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVAQSFNWKSGSGGNQQIVKEEDKSFSNFSFQTQPGPTASSTATFQSSNVSVQTQQPWSYQEATKQDNFSSGKSMMKTENSSSMQSFSPEIASVQTNHSNGFQSDYGNYPPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLAIPPSNPISTEIPDQSYATHGSGQMDSAATPENSSISIGDDDFEQSSQKCKSGGDEFDEDEPEAKRW 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01323 370 Gene3D WRKY domain 219 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01323 370 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 45 370 - -
Cca05g01323 370 SMART WRKY_cls 231 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01323 370 MobiDBLite consensus disorder prediction 281 370 - -
Cca05g01323 370 MobiDBLite consensus disorder prediction 286 346 - -
Cca05g01323 370 MobiDBLite consensus disorder prediction 167 235 - -
Cca05g01323 370 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 45 370 IPR044810 GO:0003700
Cca05g01323 370 ProSiteProfiles WRKY domain profile. 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01323 370 MobiDBLite consensus disorder prediction 35 50 - -
Cca05g01323 370 SUPERFAMILY WRKY DNA-binding domain 230 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01323 370 MobiDBLite consensus disorder prediction 35 72 - -
Cca05g01323 370 MobiDBLite consensus disorder prediction 167 231 - -
Cca05g01323 370 MobiDBLite consensus disorder prediction 347 370 - -
Cca05g01323 370 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01323 Cca-Chr5 31099366 31103155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01323 229 370 WRKY Transcription Factor Family AT2G38470 57.047 1.00e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01323 WRKY 8.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01323 K13424 - gmx:100127393 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01323 05 31099366 31103155 Cca05g01323 05 31099366 31103155 ECH
Cca01g00612 01 7821241 7824374 Cca05g01323 05 31099366 31103155 PCT