Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01319 ATGCCAAACCAGATTCAACCCCCTTTAGAAATTAAGCACTATGCCTATCCGAAATTCCAATCGGCTATTGGTACAGAAAAAGCTATGGAAAATTGTGGGATTTATGTCAAGTCTGATTGGACTGATCTGTTACGCGTTGAGTTCCTCTTTCAACCATCTATTCGGAGAGTGGAACTTCTTGAAGATCATCCTTTACACCGGGCCATCTTCTGCTATTGTTTCATAGTTCTTCGTTTCAAATTGGACTCTCAACCACAGATTGGAACACTAGGGGTGGAAGACCATGTAACCATAGAAATTGATGCTGCAAATGGAGGAGAAAGAGGAGCTGATCACAATCACAACAGAAGTGACTTCCAATCTAACCATAGCAATGGCCACCGACAAATTCAGTTGCTAAGTGACGAGTACAATTGGAAAAAATTTGAAGATAAAGTAGTGAAAGGGAATGAAAATCAGATAAGTTACTACAAATGCACACACCCCAATTGTTTTGTAAAGAAAAAAGTTGAGAAAACTAAAGATGGGGAAATTATTGAGATACACTACGAGGGTACCCACCCCCATACTAAGGCTAAGCATTCAATGAAACGGAACTCATCACATGAATATCTATATTCACTGTTACCGTCAGAGCGTGACACCACTTACTTGCCAGATCAATCATTTCCCTCCCAGGGTAGTGGACAATTGGATTATGATGTGCAGCACCGGAGTACTCAATATTCATATGAAATATAA 741 0.3995 MPNQIQPPLEIKHYAYPKFQSAIGTEKAMENCGIYVKSDWTDLLRVEFLFQPSIRRVELLEDHPLHRAIFCYCFIVLRFKLDSQPQIGTLGVEDHVTIEIDAANGGERGADHNHNRSDFQSNHSNGHRQIQLLSDEYNWKKFEDKVVKGNENQISYYKCTHPNCFVKKKVEKTKDGEIIEIHYEGTHPHTKAKHSMKRNSSHEYLYSLLPSERDTTYLPDQSFPSQGSGQLDYDVQHRSTQYSYEI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01319 246 SUPERFAMILY WRKY DNA-binding domain 129 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01319 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 99 203 IPR044810 GO:0003700
Cca05g01319 246 ProSiteProfiles WRKY domain profile. 128 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01319 246 Gene3D WRKY domain 119 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01319 246 SMART WRKY_cls 133 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01319 246 MobiDBLite consensus disorder prediction 106 125 - -
Cca05g01319 246 Pfam WRKY DNA -binding domain 135 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01319 246 PANTHER WRKY TRANSCRIPTION FACTOR 33-RELATED 99 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01319 Cca-Chr5 31040335 31041615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01319 130 202 WRKY Transcription Factor Family AT4G26440 45.946 2.33e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01319 WRKY 5.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01319 K13424 - ccaj:109792596 380.948