Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01312 ATGCAAACTTTGTCTAAGAAAGAAGACATTCTCAATGCTCATCAAAATTCAGAGTTGGCTGTTGCAGCCAAAGGCTTGTCAAGACTGAGTCACTTGGGATTTGAGGTTGATCTCCTTTATTTTTTCAGTGGTGTTCTCACAGTACAACTCATGAAAATAAAACCATGGTTAGTCATAGTTGGAGGGAGTTTCAGTTATTCCCTCATCATTCTTCGTTCCACTTTGAATGCTCTACCAAGAACCGGGTATCTCGGACTCACTGTCCAAGATCAAGTAGTCATTGAAATTGTTTCACTCTCACAAGGAACTAGTGAAACTGCTTCTCAAGCTGATTCACCCCAAGAGGTTGATGCTCCTCCAGAAAATGAGGATCGAGGATTCACAGTGACTCAAGTTGTTTCACGTAATTCACTGCAAGGCATAAGTGAGAGTGATAATAATATTAATATCATGCCACGATTCATAGAATGTATAGAGACACTTAAGAAGGAGAATGGAAAACTTATTGATGCAATTTCCAAGCATGTAGACGGATACCTTAAAACTAACGTGGCGGAAATCCATGCCGACAACAACTTAGTGGTGGATGTGTTGCCGTTGGGAATCATCAAAGACCTTCAAGAAACCGTGTGGTTGATGCTGACAAGAGGGTTTGGAGAGGACTGCTGGAGAGCGTACAGTTCTTGCAGGAGGGAATTCTTGAAGGAGTGTCTATGGGCATTTGGGTTGCAAATGCAAGATCTCAACACGGAGGACATTGACAAGATTGAGAAGGGGGCCTCTTCCTATGCAGATATTGCTATCAGGGAGGTTTCTAGGGAATTGACAATTAGTCTACTGCGCATTGCCAACCACTTGGCAACTTTTCTTGAGTGTAGAAGTTTTGCATATTGTAAGGACGGCCAGCTTCATCCGAATATACGTGAACTGATGCAAAAAATTTGTGGTGTTTGCATAAGAAGGGAAAGTAGATTTAGGCAAGGTTTAGAAAAATACACCATGATTGATAAAGAGAGGAAGCTTTCACCGCCGGTGCATGTGGCCAGGATAATAATAACAGAGTTGTTAGAGAGAATTTTGGAAGCGGACTCCAAAAATTACAATAACCATGCTCTGGGTTATGTTTTCGTCATGAACAATCTTAGATACATAGAACGAGAGGCAAACTTGTATGGATTGGTACCAATTTTTGGCCACGAATGGCTCCGAAAAAACACAATAAAATTCCAACAAAACCTCGAACTGTATCAGAAAAGCTCATGGAATAAGATTGTGGACTTGTTGAAGATGGACATTAATAATGAGTCAGAGCCTGATGTTGCAGTTGGGTTAATGAAAGACAAGCTCCGTTCCTTCAACAAATACTTTGATGAGATATGCAATGTTCAGTCTACATGGTTTGTCTTTGATGAGCAGTTAAGAGAAAAAATAATAAAATCCATAGAAAACATCTTGTTGCCAACATATGGAAACTTCATTGGGAGGTTTCAGGATTTTTTTGGAAAGTACGCTTATGAGCACATCAAGTATGGAATGTTTGACGTAGCAGATCGAATCAACAATCTGTTCCTGGCAGGGGAGTAG 1584 0.4053 MQTLSKKEDILNAHQNSELAVAAKGLSRLSHLGFEVDLLYFFSGVLTVQLMKIKPWLVIVGGSFSYSLIILRSTLNALPRTGYLGLTVQDQVVIEIVSLSQGTSETASQADSPQEVDAPPENEDRGFTVTQVVSRNSLQGISESDNNINIMPRFIECIETLKKENGKLIDAISKHVDGYLKTNVAEIHADNNLVVDVLPLGIIKDLQETVWLMLTRGFGEDCWRAYSSCRREFLKECLWAFGLQMQDLNTEDIDKIEKGASSYADIAIREVSRELTISLLRIANHLATFLECRSFAYCKDGQLHPNIRELMQKICGVCIRRESRFRQGLEKYTMIDKERKLSPPVHVARIIITELLERILEADSKNYNNHALGYVFVMNNLRYIEREANLYGLVPIFGHEWLRKNTIKFQQNLELYQKSSWNKIVDLLKMDINNESEPDVAVGLMKDKLRSFNKYFDEICNVQSTWFVFDEQLREKIIKSIENILLPTYGNFIGRFQDFFGKYAYEHIKYGMFDVADRINNLFLAGE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01312 527 PANTHER PROTEIN, PUTATIVE-RELATED 22 524 - -
Cca05g01312 527 Gene3D Exocyst complex component Exo70 293 527 - -
Cca05g01312 527 Gene3D Exocyst complex component Exo70 135 292 - -
Cca05g01312 527 MobiDBLite consensus disorder prediction 104 124 - -
Cca05g01312 527 Pfam Exo70 exocyst complex subunit 344 520 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca05g01312 527 SUPERFAMILY Cullin repeat-like 160 523 IPR016159 -
Cca05g01312 527 PANTHER EXOCYST COMPLEX PROTEIN EXO70 22 524 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01312 Cca-Chr5 30985517 30987720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01312 296 523 EXO70 exocyst subunit family AT5G58430 43.478 1.45e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01312 - - var:108336660 622.083