Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01305 ATGGCCACCGACGCTAGGGCCAAGTTCCAGAACCCAGAATTCCGCCCCGATTTCCACGCCGACTTAACGGTCTCAGCTCACGACGGTCTCCACTTCTGGCAGTTTATGATCGCCGGATCCGTCGCCGGCTGCGTCGAGCACATGGCCATGTTCCCCGTTGACACCGTCAAGACCCACATGCAGGCCCTGGGCTCCTGCCCCGTCAAATCCGTCACCGTCCGTCGGGCCCTAAGCTCTATTCTCCAATCCGAGGGCCCGTCCGCTCTCTACCGCGGCATCGGTGCCATGGGCCTCGGCGCCGGCCCGGCCCACGCCGTCTACTTCTCCGTCTACGAGACCTGCAAGCGCCGCTTCTCCGATGGAAACCCTAACAACGCCGCCGCGCACGCCGCCTCCGGCGTCTGCGCCACCGTCGCCAGCGACGCTGTGTTCACGCCCATGGACATGGTCAAGCAGAGGCTGCAATTGGGGAACAGCGGCTACAAGGGGGTGCTGGACTGTGTCCGGAGGGTCACCGCCGAGGAAGGGCTCAGGGCGTTCTACGCCTCTTACAGGACCACCGTGCTCATGAACGCGCCGTTCACCGCCGTGCATTTCGCCACCTATGAGGCCGCCAAGCGCGGCCTCAACGAGGTCTCGCCGGGGAGCGGCGACGACGAGCGGTTGGTGGTGCACGCCACCGCCGGGGCTGCTGCTGGTGCTTTGGCTGCCGCGGTTACCACGCCGCTTGATGTTGTGAAAACTCAATTGCAGTGTCAGGGTGTTTGCGGTTGTGATAGGTTCCAAAGTGGTTCAATTGGGGATGTTATTAAAACAATAGTGAAAAAAGATGGATACAGAGGGCTTATGCGAGGGTGGATTCCAAGGATGCTCTTTCATGCTCCTGCAGCTGCTATTTGCTGGTCTACATATGAGGCCGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAGAGACATTGGCACTGTCACCTAA 975 0.6031 MATDARAKFQNPEFRPDFHADLTVSAHDGLHFWQFMIAGSVAGCVEHMAMFPVDTVKTHMQALGSCPVKSVTVRRALSSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKRRFSDGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVLDCVRRVTAEEGLRAFYASYRTTVLMNAPFTAVHFATYEAAKRGLNEVSPGSGDDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFQSGSIGDVIKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQRDIGTVT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01305 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
Cca05g01305 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
Cca05g01305 324 Gene3D Mitochondrial carrier domain 10 158 IPR023395 -
Cca05g01305 324 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Cca05g01305 324 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Cca05g01305 324 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Cca05g01305 324 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 319 - -
Cca05g01305 324 PANTHER MITOFERRIN-1-RELATED 1 319 - -
Cca05g01305 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Cca05g01305 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Cca05g01305 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Cca05g01305 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Cca05g01305 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Cca05g01305 324 Gene3D Mitochondrial carrier domain 159 323 IPR023395 -
Cca05g01305 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Cca05g01305 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01305 Cca-Chr5 30886426 30890556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01305 131 318 Chloroplast and Mitochondria Gene Families AT1G07030 29.319 1.66e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01305 K15113 - gmx:100802640 603.979