Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01299 ATGGGATGCACTTCACTGCTTAGAAGCCCCAAGAAAGAAGAACAGGAAGTACCCGATTCTAACCAATCTTACACCTATGAAGATTTCAATATTTTGGACGAACTCGTTGAAGGGGTCTTGAACACTAAGGAAGAACAAGAGTTACCCCATCAAAACTCTTCTAGTGCCGAGCTTCATTGGGATTTCATGGAATGGGAGGAGTTCATTCCACCCTTtggagaggaaggagaagatgaaaatgaagggaaacaagaggtaagagagaacacgaacatgaTGGATAATAGAAGCCTTTTCGAGGAGGAGGAGGAGATAAAGAGAGAAAACATTAATGTTGGGTTTTGGGAAGTGGATGATGAGAAGATGGTGGCTTTGAACTTGAACTTGAACTATCAAGAGGTTTTGGATGCATGGTCTGACCGTGGCTCTCTTTGGGCTGATGATTGTTCTCTTTCATTCGCTACCAATAATGCCTACTACATGGGGGAAGTGCCAGTATTGGAAGAAGAGAGAGCAAGAAGAGAAGCAAGTGTTCTAAGGTACAAAGAGAAGAGGCAGAACCGATTGTTCTCAAAGAAGATAAGATACCAAGTTCGGAAATTAAACGCTGATAAAAGACCCAGAATCAAGGGTCGCTTTGTGAAGAGACACTGA 654 0.3869 MGCTSLLRSPKKEEQEVPDSNQSYTYEDFNILDELVEGVLNTKEEQELPHQNSSSAELHWDFMEWEEFIPPFGEEGEDENEGKQEVRENTNMMDNRSLFEEEEEIKRENINVGFWEVDDEKMVALNLNLNYQEVLDAWSDRGSLWADDCSLSFATNNAYYMGEVPVLEEERARREASVLRYKEKRQNRLFSKKIRYQVRKLNADKRPRIKGRFVKRH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01299 217 MobiDBLite consensus disorder prediction 1 24 - -
Cca05g01299 217 Pfam CCT motif 174 216 IPR010402 GO:0005515
Cca05g01299 217 PANTHER CCT MOTIF FAMILY PROTEIN 4 217 - -
Cca05g01299 217 ProSiteProfiles CCT domain profile. 174 216 IPR010402 GO:0005515
Cca05g01299 217 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01299 Cca-Chr5 30829881 30831268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01299 118 216 C2C2-CO-like Transcription Factor Family AT1G73870 45.763 7.18e-22 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g01299 CCT 2.1e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01299 - - gmx:100801038 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01299 05 30829881 30831268 Cca05g01299 05 30829881 30831268 ECH