Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01297 ATGGAGAAGGTGGTATCCGTTACCGGCGGGGGCGGCTGCATTGGTTCATGCCTCGTCCATCTCCTTTTAGATCGCGGCTACACCGTTCACGCCACCGTCCAAAATCTCAACGATGAAGCCGAGACCAAGCATCTTCAATCCCTTGACGGAGCCTCCACCCGCCTCCGCCTCTTCCAGATGGATCTCCTCCGCCCCGACTCCGCCCTCGCCGCCTTCCGCGGCTGCACCGGCGTCTTCCACCTCGCCTCTCCCTGCATTGTCGACCAAGTCCACGACCCCGAGAAGGAGCTTCTGGACCCGGCGATCAAGGGAACCCTGAACGTGCTTGCGGCGGCGAAGGAAGCAGGGGTGCGGCGCGTGGTGCTCACGTCCTCCATCTCCGCGATTACGCCGAGTCCCAATTGGCCCAGCGATGTTGCCAAGACGGAGGAGTGCTGGACCGATGTTGAATATTGCAAGCAAAAGGGGTTGTGGTATCCTTTGTCGAAGACTTTGGCTGAGAAAGCGGCTTGGGATTTTTCCAAGGAGCATGGGTTGGATGTTGTGGTGGTGAATCCTGGGACTGTGATGGGTCCTGTTATTCCTCCGAGGCTTAATGCGAGCATGATCATGCTCGTGCGCCTTCTTCAAGGCTGTACTGAAATGTATGAGGACTTTTTTATGGGATCGGTCCACTTTAAGGATGTAGCATTGGCCCATATTTTGGTGTATGAGAACCAATCAGCGGCTGGTAGGCATTTGTGTGTTGAAGCTATCTCTCACTATGGTGACTTTGTGGCGAAAGTTGCTGAACTTTATCCCGAGTATAATGTGCCTAGGATTCAACGAGATACCCAGCCGGGATTATTGAGAGTCAAGGATGGGTCAAAGAAACTTATTGATTTGGGTTTGCAATTCATTCCAATGGAGAAGATTATTAAGGATGCTGTAGAGGATTTGAAGAGCAAAGGGTTCCTTTCTTAA 963 0.5286 MEKVVSVTGGGGCIGSCLVHLLLDRGYTVHATVQNLNDEAETKHLQSLDGASTRLRLFQMDLLRPDSALAAFRGCTGVFHLASPCIVDQVHDPEKELLDPAIKGTLNVLAAAKEAGVRRVVLTSSISAITPSPNWPSDVAKTEECWTDVEYCKQKGLWYPLSKTLAEKAAWDFSKEHGLDVVVVNPGTVMGPVIPPRLNASMIMLVRLLQGCTEMYEDFFMGSVHFKDVALAHILVYENQSAAGRHLCVEAISHYGDFVAKVAELYPEYNVPRIQRDTQPGLLRVKDGSKKLIDLGLQFIPMEKIIKDAVEDLKSKGFLS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01297 320 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 3 311 - -
Cca05g01297 320 Pfam NAD dependent epimerase/dehydratase family 6 241 IPR001509 -
Cca05g01297 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 313 IPR036291 -
Cca05g01297 320 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 311 - -
Cca05g01297 320 CDD FR_SDR_e 5 297 - -
Cca05g01297 320 Gene3D - 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01297 Cca-Chr5 30818875 30822269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01297 3 320 Monolignol Biosynthesis Gene Families AT5G58490 76.730 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01297 - - gmx:100803241 603.208