Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01288 ATGGCGATGGCAGCGTTAAAGTTGTTGGTGGCGGTGGTGAGTCTGTTTTCAGCGTTGAGCGTGTGTTGGACGCTGAAGAGCCAAGGCTTGGCGGTGGTAGCGTTGAGAGAGAGGGTGGTCAGAGACCCGTTGGGGGCTTTATCGAGTTGCAGTGGccatgatccatgctcctgcttcggtgtccactgctcTCGCGGTAATGTTGTTGCCTTGAATTTAAAAGACCTTTGTCTCGAAGGAACACTGCCACCAGAAATTGGAAACCTAGCTCACATAAAATCAATCATTTTGCGCAATAATTCTTTCTTTGGAGAAATTCCCAAAGAGATACTACACTTGAAGGAGTTGGAAGTCCTTGACTTGGGATACAACAACTTTAGTGGATCACTTCCATTTGACCATGCCAATATGCCATCCCTCACCACTCTTTTATTGGACAACAATTACCATCTAGCCAACTTAACTCCAGAACTTCGGATGGTTTCTGAATTTGATGGCAATGAAAACCATCTAACCGACGCCACCACCAGAGAATTATTTGTTGGCAGATGCAATTTACGGCACACTGGCCAACATGGGGATATTGCATACAGGAGGCAACTTCTCATGCCAGCAAATGCTGCCAATACACCTAGAATCCAAGGGGATGTCAACCAAGGGAAGCTTAAACAATCAGCATCACATTTTCCTTCTTCATTACCACCAGATTTTGAGCCTTTCTCATCATCCCCATCAGAAAGCCCTTCATATTCTCCAGGATCAGCTCCAATATCATATTCACCATCGCCATCTCCCTCCAATATTTTTTTCACTCCTTCACCTGTAGTGTCACCAACTCCAGATATATCACCCACAGCAAGCACACCTCTCGCTGTGTCTACACCACCAGAGATTAATTGGATTCCAGCACCTAGCCCTTCTCCATTTTCTAACCAAGGGAACACATATAGTTCCAATCCAATGCATCATTCAGCAATAATGTGGTCTGCAGTAGGGGGCTTCTCCTTATTGGTTTTGGTGTCAGCCATTATTTTTGCTTGCTTCCAAACTAGGAAGGTTGTGGCTGTTAAACCTTGGTCCACAGGGTTGAGTGGCCAACTGCAAAAAGCTTTTGTAAAAGGTGTGCCAAGTCTTAAACGAGGAGAACTTGAAGCAGCTTGCGAATATTTCAGCAACATCATTGGTTCTCTGCCTGATGGAACTGTGTATAAGGGGACACTCTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCAGTGATCACAGCTCAAAACTGGTCAAAAAGTATGGAAGCTCAATTCCGAAAGAAGATAGCGACATTGTCTAGAGTGAACCACAAAAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGTTTGAATACGCACCAAATGGAACACTCTTTGAGCATCTACACATTAGAGAAGCAGAAGGACTAAATTGGACAATGAGAATGAGGATAGCTATGGGAATAGCCTATTGCCTAGAGTATATGCATGGGTTGAAACCATCCATTGCCCATAGAAACCTGCATTCTTCCTTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGATCTTAGTTTATGGAATGATATGTGTGCTACAAAGAATGGGTCTGCAACCACACAACTCTTGGAAACATCATCAGCAGACACCAAGGACAATGTTTACAGCTTTGGAATAATATTGTTTGAGTTGATTACAGGGAGAATTCCTCATGCTGGGGACAATGATCTTCTGGAAGACTGGGCAGCAGAATATGTAAGGTGGGGGAAATCCTTAAGAGATGTTGTGGATCCAAGACTGAACTCTTTGCAAGAACAAGAGATTGAGGAATGGTCTAAAGTGATAAGAAATTGTGTACATACAGATCCAGAGAAAAGGCCAACTATGAAAGAAGTTACAACTAGACTCAAGGAAATCACAGCTATGGGGCCTGATGGAGCAAATCCAAAAGCATCACCACTTTGGTGGGCAGAAATGGCAATTACATCAACTGATTCAAGCTGA 2043 0.4229 MAMAALKLLVAVVSLFSALSVCWTLKSQGLAVVALRERVVRDPLGALSSCSGHDPCSCFGVHCSRGNVVALNLKDLCLEGTLPPEIGNLAHIKSIILRNNSFFGEIPKEILHLKELEVLDLGYNNFSGSLPFDHANMPSLTTLLLDNNYHLANLTPELRMVSEFDGNENHLTDATTRELFVGRCNLRHTGQHGDIAYRRQLLMPANAANTPRIQGDVNQGKLKQSASHFPSSLPPDFEPFSSSPSESPSYSPGSAPISYSPSPSPSNIFFTPSPVVSPTPDISPTASTPLAVSTPPEINWIPAPSPSPFSNQGNTYSSNPMHHSAIMWSAVGGFSLLVLVSAIIFACFQTRKVVAVKPWSTGLSGQLQKAFVKGVPSLKRGELEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVITAQNWSKSMEAQFRKKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHLHIREAEGLNWTMRMRIAMGIAYCLEYMHGLKPSIAHRNLHSSFIYLTEDYAAKISDLSLWNDMCATKNGSATTQLLETSSADTKDNVYSFGIILFELITGRIPHAGDNDLLEDWAAEYVRWGKSLRDVVDPRLNSLQEQEIEEWSKVIRNCVHTDPEKRPTMKEVTTRLKEITAMGPDGANPKASPLWWAEMAITSTDSS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01288 680 ProSiteProfiles Protein kinase domain profile. 388 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01288 680 MobiDBLite consensus disorder prediction 211 258 - -
Cca05g01288 680 SUPERFAMILY L domain-like 41 187 - -
Cca05g01288 680 MobiDBLite consensus disorder prediction 210 258 - -
Cca05g01288 680 Gene3D Transferase(Phosphotransferase) domain 1 471 659 - -
Cca05g01288 680 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cca05g01288 680 Gene3D Phosphorylase Kinase; domain 1 363 470 - -
Cca05g01288 680 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 6 679 - -
Cca05g01288 680 PANTHER PROTEIN MALE DISCOVERER 2 6 679 - -
Cca05g01288 680 Pfam Protein tyrosine and serine/threonine kinase 393 649 IPR001245 GO:0004672|GO:0006468
Cca05g01288 680 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Cca05g01288 680 SUPERFAMILY Protein kinase-like (PK-like) 381 649 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01288 Cca-Chr5 30682043 30688417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01288 6 656 Receptor kinase-like Gene Family AT2G01210 24.390 1.29e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca05g01288 PK_Tyr_Ser-Thr 9.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01288 - - gmx:100779427 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01288 05 30682043 30688417 Cca05g01288 05 30682043 30688417 ECH
Cca05g01288 05 30682043 30688417 Cca01g00639 01 8311183 8321864 ECH
Cca01g00639 01 8311183 8321864 Cca05g01288 05 30682043 30688417 PCT