Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01282 ATGCCGAGTCAGTCCGAGTCACCCGGCTACTCACTGAGTCAACTCGCTCAGAACATGTTCTCCGACGACAACAACAGCAACATCATGCTCGCAGCCATAGTTTCGTTGCTCCTAGTCATCCTCTTCGTCCTCCTACTCCACGTGTACGCCAGGTGGTTCCTGTCTCAGGCGCAATTACATTCCCACACTCGCCGGCGGCAATCTCCGGCGACCGTCTCCGGCGTTCTGGAACCTTCTCATTTCCACAGCATCAACATAGAATCCTCACCCACGTGCACCAAAGGCCTCGACTCGGCGACAGTTTCGGCGATTCCCATGTTTGTGCACGGAACAGAGAAAACAGAGGAATCAGGGGAAACAGGAGAAACAGAGGAATTGGAATGCGTTATTTGTTTGAGCCTCATTGAAGAGGGTGAGGTTGGAAGGAGTTTGCCAAAGTGTGGACACGCTTTCCACGTGGAGTGCATTGACATGTGGTTGAGTTCGCACTGCAATTGTCCAATTTGTAGAGCTCCTATTGTGGTGGTGAGTAGCGATTCTGAATTGGGTTCTGTTGATAGTGATGGTGATGGTGTGTTTGAGATTGTGGTTGTTACTCCGGGTTATGAGATTAGTGAGAGTGAGCGTGAGGATGATGGTGATGGCGATTCTGTTCCAGAAACTTTTTCATCTTTGTTGGGTTGCTCTTGGAAGAGATTGCTGAGTAAAGTTTTTGTGTCATCTGATGTAATGGTTCACAATGAAATATGA 750 0.488 MPSQSESPGYSLSQLAQNMFSDDNNSNIMLAAIVSLLLVILFVLLLHVYARWFLSQAQLHSHTRRRQSPATVSGVLEPSHFHSINIESSPTCTKGLDSATVSAIPMFVHGTEKTEESGETGETEELECVICLSLIEEGEVGRSLPKCGHAFHVECIDMWLSSHCNCPICRAPIVVVSSDSELGSVDSDGDGVFEIVVVTPGYEISESEREDDGDGDSVPETFSSLLGCSWKRLLSKVFVSSDVMVHNEI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01282 249 SMART ring_2 128 169 IPR001841 -
Cca05g01282 249 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 243 IPR044675 -
Cca05g01282 249 Pfam Ring finger domain 127 170 IPR001841 -
Cca05g01282 249 SUPERFAMILY RING/U-box 122 176 - -
Cca05g01282 249 PANTHER - 1 243 - -
Cca05g01282 249 CDD RING-H2_EL5_like 128 170 - -
Cca05g01282 249 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Cca05g01282 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01282 Cca-Chr5 30627498 30628740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01282 27 171 Rapid Response to Elicitors AT3G16720 38.095 8.63e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01282 - - gmx:102665763 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01282 05 30627498 30628740 Cca05g01282 05 30627498 30628740 ECH
Cca01g00659 01 8619012 8620140 Cca05g01282 05 30627498 30628740 PCT