Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01279 ATGGCTTCGTGGGTGAGAGGCAAGTGCGTCGGTAAGGGCGCGTTCGGCGTTGTCAACATCGCGCTTTCCAAACACGACGCTCGCGTTTTCGCGGTGAAGTCGGTCGACATCAAGGCGGGGCGACAGGGACAGGTGGAGGCGTTGGAGAACGAGATTGCGATTCTGAGACGCCTGGCCTCGCCGCACGTGGTGGCTTATCTCGGCGACGATGTCACGTGCGAAGAGGGATTCTTCATCAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGACTTGGCTCATGCTGACGTGGACCAGCGGTTGCTCAGGCGCTACGCCTGGTGCATCGTTAGCGCGCTGCGTGATGTGCACGCGCGAGGTTTCGTCCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCGCCGCTGATGGCTCCGTATTAACATCTACCTCTCAACCACATTCCCCACTACAACCACATGTTCAAATTAATATTCCTACGCAACACGACAAATTATAA 507 0.57 MASWVRGKCVGKGAFGVVNIALSKHDARVFAVKSVDIKAGRQGQVEALENEIAILRRLASPHVVAYLGDDVTCEEGFFIRNLHLEYMPGGTVADLAHADVDQRLLRRYAWCIVSALRDVHARGFVHCDVKGRNVLLAADGSVLTSTSQPHSPLQPHVQINIPTQHDKL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01279 168 SMART serkin_6 4 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01279 168 Pfam Protein kinase domain 6 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01279 168 Gene3D Transferase(Phosphotransferase) domain 1 3 145 - -
Cca05g01279 168 SUPERFAMILY Protein kinase-like (PK-like) 4 142 IPR011009 -
Cca05g01279 168 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 141 - -
Cca05g01279 168 ProSiteProfiles Protein kinase domain profile. 4 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01279 168 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 141 - -
Cca05g01279 168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca05g01279 168 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01279 Cca-Chr5 30594642 30595148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01279 4 141 MAP Kinase Kinase Kinase AT2G30040 55.396 8.18e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca05g01279 Pkinase 2.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01279 - - ccaj:109816023 288.5