Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g01277 | ATGGCTGCAAACGCCCCTATATCCATGAAAGAGACCATAACGCTGGGAAGCGTTGGAATCAACCCGCAATTCATTACATTTACTCATGTGACAATGGAATCAGATAAGTACATATGTGTCAGGGAAACTTCACCTCAGAACAGTGTTGTTATCATTGACATGAGCATGCCAATGCAGCCTTTGAGACGGCCCATAACCGCTGATTCTGCTTTGATGAACCCCAATTCTAGAATTCTTGCTCTTAAAGCCCAAGTTCCGGGGACCACTCAGGACCATTTGCAAGTTTTTAACATTGAAATGAAAGCAAAGATGAAATCGTATCAGATGAAAGAACAGGTTGTCTTTTGGAAGTGGATAACTCCAAATACACTGGGAATTGTCACTCAGACGTCTGTATATCATTGGTCAGTTGAAGGTGATAGTGAGCCAACAAAGATGTTTGACCGAACAGCTAATCTGTCAAATAACCAAATTATCAATTATCGTTGTGATCCTAATGAAAAATGGTTGGTTTTGATTGGAATTGCTCCTGGTTCACCAGAGAGACCACAACTAGTAAAAGGAAACATGCAACTCTTCTCTATGGATCAGCAACGTAGTCAGGCTCTTGAAGCACATGCTGCCTGTTTTGCTACGTTTAGAGTGGCTGGGAATGATAAGGATTCTACTCTTATTTGTTTTGCATCAAAGAGTATGAATGCTGGACAAGTTACATCAAAGATGCATGTCATTGAACTTGGTGCCCAGCCAGGCAAACCATCATTTACTAAAAAACAAGCAGATCTGTTCTTCCCTCCGGACTTTGCTGACGACTTTCCTGTGTCAATGCAGATTTCAAATAAATATGGATTTATTTATGTTATCACAAAGCTTGGACTTTTGTTTGTCTATGACCTGGAAACTGCAACTGCAGTTTATAGAAACCGAATCAGTCCCGATCCTATATTTTTGACCACAGAAGCACCATCAGTAGGGGGTTTTTATGCCATCAATAGACGTGGTCAAGTGTTGCTTGCTACAATAAATGAAGCATCCATTGTACCTTTTGTTAGTGGCCAGCTAAACAATTTGGAACTTGCTGTTAATCTGGCTAAAAGAGGAAACCTCCCTGGTGCAGAAGAATTGGTTGTCAAGCGGTTTCAAGAATTATTTGCTCAGACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCAGAATCTCCACAAGGAATTCTTCGAACTCCTGAGACTGTTGCTAAATTTCAGACTGTACCTGTGCAAGCTGGGCAAACACCACCACTGTTACAGTACTTTGGTACTCTGTTAACCAGGGGAAAACTCAATGCTTTTGAGTCATTGGAACTATCACGGCTTGTGGTAAATCAAAACAAAAAGAACCTTTTGGAAAATTGGCTAGCAGAGGACAAACTTGAATGCAGCGAGGAGCTTGGTGATCTTGTGAAGACAGTGGATAATGACCTTGCATTGAAAATATATATTAAAGCCAGAGCCACACCGAAAGTTGTTGCAGCATTTGCTGAGAGGAGGGAGTTTGACAAGATTCTGATATACTCAAAGCAGGTCGGATACACGCCTGATTATTTGTTCCTTCTGCAAACAATATTGCGGGCAGATGCTCAGGGTGCTGTAAATTTTGCTCTGATGATGTCCCAAATGGAGGGGGGTTGCCCTCTTGACTACAACACAATAACTGATCTCTTTCTTCAGAGGAATTTAATCCGCGAGGCAACTGCCTTTTTATTGGATGTGCTGAAACCAAACCTTCTGGAACATGGATATCTTCAAACGAAGGTGCTGGAAATTAATCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTTAGTCATTATGATCGTCCACGGATTGCTCAGCTTTGTGAAAAGGCTGGCCTTTTCATACGGGCTCTTCAGCATTATACTGAGTTGCCTGACATCAAACGAGTCATTGTGAACACACATGCTATTGAACCACAGGCTCTAGTTGAGTTCTTTGGAACTCTTTCGAAAGAATGGGCGCTAGAGTGCATGAAAGATCTTTTACTGGTTAACCTTAGGGGAAATCTTCAAATAATTGTGCAGACTGCTAAGGAATATTGTGAACAGCTCGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTGCATATTTGAGCTCTAGTGAGGATCCTGATATTCACTTCAAGTATATTGAAGCAGCTGCTAAAACTGGACAAATTAAGGAGGTAGAGCGTGTTACTCGGGAATCAAACTTTTATGATGCTGAGAAGACCAAGAACTTTCTAATGGAAGCCAAGCTTCCAGATGCACGACCTTTGATTAATGTGTGTGATCGTTTTGGTTTTGTTCCGGATCTCACCCATTATCTCTACACCAGCAACATGCTTCGTTATATCGAGGGATATGTTCAAAAGGTAAATCCAGGAAATGCTCCTCTAGTTGTAGGACAGTTGTTGGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTTATACTTTCAGTTAGGTCTCTTCTTCCGGTTGAGCCTTTAGTCGAAGAATGTGAGAAGAGGAATCGTCTCCGCTTGCTTACTCAGTTCTTGGAGCATCTTGTAAGTGAGGGAAGCCAGGATGTGCATGTGCATAATGCTCTGGGTAAAATTATCATTGACAGCAATAACAATCCTGAGCATTTTCTTACAACCAACCCATATTATGATTCCCGTGTTGTTGGTAAATATTGTGAGAAACGGGATCCTACACTTGCTGTTGTTGCTTACCGAAGGGGGCAATGTGATGATGAGCTTGTTAATGTTACCAATAAAAATTCCTTGTTCAAACTCCAAGCCAGATATGTTGTGGAACGTATGGATTCTGACCTTTGGGAGAAAGTTCTTAATCCTGAGAATGAGTTTAGAAGGCAGTTGATTGATCAAGTGGTGTCCACTGCTTTGCCTGAAAGCCAGAGTCCTGAGCAAGTTTCAGCTGCAGTGAAAGCTTTTATGACCGCTGATCTTCCCCATGAGTTGATTGAGCTTCTCGAAAAGATTGTCTTACAAAATTCTGCTTTCAGTGGAAACTTTAATCTGCAAAATTTGCTGGTCCTTACTGCAATCAAGGCAGATCCTACAAGAGTCATGGATTACATTAATAGGTTGGACAACTTCGATGGCCCTGCTGTTGGGGAGGTGGCAGTAGAGGCACAATTATATGAAGAAGCTTTTGCCATTTTCAAAAAATTTAATTTGAATGTTCAGGCTGTAAATGTCCTACTAGATAATCTTCGGACCATTGATCGAGCTGTGGAGTTTGCATTCCGGGTTGAAGAAGATGCTGTATGGAGCCAAGTAGCTAAGGCACAGCTAAGAGAAGGCTTAGTAAGTGACGCAATTGAATCATTCATCCGTGCAGAAGATTCCACTCAATTCTTAGAGGTTATAAAAGCTGCTGAAGATGCAGAAGTATACCATGATCTAGTAAGGTACCTTCTCATGGTTAGGCAGAACAACAAAGAGCCCAAGGTGGACAGTGAGCTTATTTATGCATATGCAAAGATTGATCGGCTTGGAGAAATTGAAGAGTTTATATTAATGCCAAATGTTGCTAATTTGCCAAATGTTGGAGACCGTTTGTATGATGATGCTCTCTATGAGGCTGCAAAAATTATATTTGCTTTTATTTCTAACTGGGCTAAGTTAGCAGTGACATTGGTGAAGCTTAAACAATTCCAAGGTGCTGTTGATGCTGCTAGGAAAGCAAACAGTTCAAAAACATGGAAGGAAGTTTGTTTTGCATGTGTTGAGGCTGAGGAATTCCGCTTGGCTCAGATTTGTGGTCTCAATGTCATTATTCAGGTGGATGATTTGGAAGAGGTTAGTGAGTTTTATCAGAACAGAGGATGCTTTAATGAACTCATATCTCTAATGGAGAGTGGACTAGGACTGGAGCGCGCCCATATGGGTATCTTTACTGAGTTGGGAGTTCTTTATGCAAGATATCGTTATGAGAAGTTAATGGAGCACATTAAGTTGTTCTCAACTCGGCTTAACATTCCCAAGCTTATTCGTGCCTGTGATGAGCAGCAGCACTGGAAGGAACTTACATACCTATATATCCAATATGATGAGTTTGATAATGCTGCAACCACTATAATGAATCACTCTCCAGAAGCATGGGACCACATGCAATTCAAAGATGTTATAGTTAAGGTTGCAAGTGTGGAGCTCTACTATAAGGCTGTTCACTTTTACTTGCAAGAACACCCTGATATGATAAATGATGTTCTTAATGTGCTTGCCCTTCGTGTGGACCATACCCGTGTTGTGGATATAATGCGGAAGGCAGGCCACATCCGACTGGTTAAGCCATACATGGTTGCAGTTCAAAGCAATAATGTGTCTGCTGTTAATGAAGCTTTGAATGAAATTTATGTTGAGGAGGAGGACTATGATAGACTTCATGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAGCTTCTCGAGATGAGGCGTGTTGCTGCTTATATTTATAAGAAAGCTGGAAGATGGAAGCAGTCCATTGCTTTGTCGAAAAAAGACAATCTTTATAAGGACTGTATGGAAACGTGCTCTCAATCTGGTGACCGTGAGCTCTCCGAGGATTTGCTTGTTTTCTTTATTGAGCAGGGAAAGAAAGAGTGCTTTGCGTCATGCCTCTTTGTGTGTTATGATATTATACGGCCAGATGTGGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCCTACAGTTTATTCGAGAGTATACTGGTAAAGTTGATGAGCTTATAAAGCACAAGATTGAAACACAAAATGAGGAGAAAGCTAAAGAGAAGGAAGAGAAGGAAGTTATTGCTCAGCAGAATATGTATGCCCAGTTACTACCACTTGCTTTGCCTGCACCACCAATGCCAGGTATGGGTGGAGGAGGGTATGCTCCCCCAACAACACCTCCTATGGGTGGTATGGGGATGCCACCAATGCCCCCTTTCGGCATGCCTCCAATGGGCGGCAGCGGCTCCTACTGA | 5118 | 0.4166 | MAANAPISMKETITLGSVGINPQFITFTHVTMESDKYICVRETSPQNSVVIIDMSMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQVFNIEMKAKMKSYQMKEQVVFWKWITPNTLGIVTQTSVYHWSVEGDSEPTKMFDRTANLSNNQIINYRCDPNEKWLVLIGIAPGSPERPQLVKGNMQLFSMDQQRSQALEAHAACFATFRVAGNDKDSTLICFASKSMNAGQVTSKMHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGFIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTTEAPSVGGFYAINRRGQVLLATINEASIVPFVSGQLNNLELAVNLAKRGNLPGAEELVVKRFQELFAQTKYKEAAELAAESPQGILRTPETVAKFQTVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRADAQGAVNFALMMSQMEGGCPLDYNTITDLFLQRNLIREATAFLLDVLKPNLLEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACIKLFEQFKSYEGLYFFLGAYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDSDLWEKVLNPENEFRRQLIDQVVSTALPESQSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLVLTAIKADPTRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNLRTIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAEDSTQFLEVIKAAEDAEVYHDLVRYLLMVRQNNKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPNVGDRLYDDALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVEAEEFRLAQICGLNVIIQVDDLEEVSEFYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVASVELYYKAVHFYLQEHPDMINDVLNVLALRVDHTRVVDIMRKAGHIRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLHESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGDRELSEDLLVFFIEQGKKECFASCLFVCYDIIRPDVALELAWMNNMIDFAFPYLLQFIREYTGKVDELIKHKIETQNEEKAKEKEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGGYAPPTTPPMGGMGMPPMPPFGMPPMGGSGSY | 1705 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g01277 | 1705 | Pfam | Clathrin propeller repeat | 19 | 54 | IPR022365 | - | |
| Cca05g01277 | 1705 | Pfam | Clathrin propeller repeat | 154 | 196 | IPR022365 | - | |
| Cca05g01277 | 1705 | Coils | Coil | 1626 | 1651 | - | - | |
| Cca05g01277 | 1705 | Gene3D | - | 1 | 376 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Cca05g01277 | 1705 | Pfam | Clathrin-H-link | 368 | 433 | - | - | |
| Cca05g01277 | 1705 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 4 | 342 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Cca05g01277 | 1705 | SUPERFAMILY | ARM repeat | 1195 | 1530 | IPR016024 | - | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 1287 | 1433 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 992 | 1137 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 699 | 841 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 846 | 985 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 1436 | 1595 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 1141 | 1282 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SMART | CLH_2 | 550 | 692 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | PIRSF | CHC | 2 | 1686 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Cca05g01277 | 1705 | SUPERFAMILY | ARM repeat | 345 | 499 | IPR016024 | - | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1436 | 1579 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 1 | 1701 | - | - | |
| Cca05g01277 | 1705 | Pfam | Clathrin, heavy-chain linker | 343 | 366 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 992 | 1137 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1141 | 1282 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SUPERFAMILY | ARM repeat | 1051 | 1194 | IPR016024 | - | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 699 | 841 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SUPERFAMILY | ARM repeat | 900 | 1065 | IPR016024 | - | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 556 | 689 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 849 | 975 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 700 | 839 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 1144 | 1280 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 1289 | 1430 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 1439 | 1578 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Pfam | Region in Clathrin and VPS | 992 | 1130 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 846 | 985 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | Gene3D | Tetratricopeptide repeat domain | 1196 | 1535 | IPR011990 | GO:0005515 | |
| Cca05g01277 | 1705 | Gene3D | Tetratricopeptide repeat domain | 901 | 1055 | IPR011990 | GO:0005515 | |
| Cca05g01277 | 1705 | Gene3D | Tetratricopeptide repeat domain | 1056 | 1195 | IPR011990 | GO:0005515 | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 550 | 696 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | SUPERFAMILY | ARM repeat | 456 | 792 | IPR016024 | - | |
| Cca05g01277 | 1705 | Gene3D | - | 1541 | 1637 | - | - | |
| Cca05g01277 | 1705 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1287 | 1433 | IPR000547 | GO:0006886|GO:0016192 | |
| Cca05g01277 | 1705 | PANTHER | CLATHRIN HEAVY CHAIN | 1 | 1701 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g01277 | Cca-Chr5 | 30545096 | 30559883 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g01277 | K04646 | - | gmx:100776763 | 3162.86 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g01277 | 05 | 30545096 | 30559883 | Cca05g01277 | 05 | 30545096 | 30559883 | ECH | |
| Cca05g01277 | 05 | 30545096 | 30559883 | Cca01g00664 | 01 | 8685995 | 8702213 | ECH |