Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01275 ATGGCTTCGTGGGTGAGAGGCAAGTGCGTCGGTAAGGGCGCGTTCGGCGTTGTCAACATCGCGCTTTCCAAACACGACGCTCGCGTTTTCGCGGTGAAGTCGGTCGACATCAAGGCGGGGCGACAGGGACAGGTGGAGGCGTTGGAGAACGAGATTGCGATTCTGAGACGCCTGGCCTCGCCGCACGTGGTGGCTTATCTCGGCGACGATGTCACGTGCGAAGAGGGATTCTTCATCAGGAACCTTCATTTGGAGTACATGCCAGGTGGCACCGTCGCTGACTTGGCTCATGCTGACGTGGACCAGCGGTTGCTCAGGCGCTACGCCTGGTGCATCGTTAGCGCGCTGCGTGATGTGCACGCGCGAGGTTTCGTCCACTGCGACGTCAAGGGGAGGAACGTGCTCCTCGCCGCTGATGGCTCCGTCGCCAAGCTCGCCGACTTCGGCGCCGCTGTCGCCGCCGAGGCCGCGGTTATGCCGCGGGGGAGCCCGATGTGGATGGCACCGGAGGTGGTGCGGCGGGAGCGGCAGGGGCCCGAGGCGGACGTGTGGTCGCTCGGGTGCACGGTGGTGGAGATGGTGACGGGGAAGCCGGCGTGGGAGGATCGAGGTGTGGACACGCTGAGTCGAATCGGTTACTCGGACGAGTTGCCGGAGTTTCCGAGCAAACTGTCGGAGCTAGGGAGAGATTTTCTCGACAAGTGTCTGAGAAGGGAACCAAGGGAACGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTTTGCTTCCCTGCGACCGCGTTTTGGAATCGTCGCCGAGGTGTGTTCTGGACTGGGTTGACTCAGAGTTCGCCGAGTCGGATAACGAACGTGAACACGAAGAGGAGAAAATAATGTTAAATTTTAACCGCAAAGAAAATTCAGTAAAAAATAGGATTAGTAAATTAGCGGCGGGGTCGAGGGTAAATTGGGAAAGTGAGGGTTGGGTTGTGGTGAGGGAAATCGAGTGGAATGGAGAACCATGGACAAGTGGAACAGAAAGAGCGTGTGATGATGGTGTGAGTTGGAACAAAGAAAGGGTATGGGTGGCAAAAGTTGGATAG 1083 0.5826 MASWVRGKCVGKGAFGVVNIALSKHDARVFAVKSVDIKAGRQGQVEALENEIAILRRLASPHVVAYLGDDVTCEEGFFIRNLHLEYMPGGTVADLAHADVDQRLLRRYAWCIVSALRDVHARGFVHCDVKGRNVLLAADGSVAKLADFGAAVAAEAAVMPRGSPMWMAPEVVRRERQGPEADVWSLGCTVVEMVTGKPAWEDRGVDTLSRIGYSDELPEFPSKLSELGRDFLDKCLRREPRERWSCDRLLQHPFLLPCDRVLESSPRCVLDWVDSEFAESDNEREHEEEKIMLNFNRKENSVKNRISKLAAGSRVNWESEGWVVVREIEWNGEPWTSGTERACDDGVSWNKERVWVAKVG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01275 360 Gene3D Transferase(Phosphotransferase) domain 1 2 320 - -
Cca05g01275 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 336 - -
Cca05g01275 360 SUPERFAMILY Protein kinase-like (PK-like) 4 292 IPR011009 -
Cca05g01275 360 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 336 - -
Cca05g01275 360 Pfam Protein kinase domain 6 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01275 360 SMART serkin_6 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01275 360 ProSiteProfiles Protein kinase domain profile. 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01275 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca05g01275 360 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Cca05g01275 360 CDD STKc_MAPKKK 3 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01275 Cca-Chr5 30523424 30524625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01275 4 326 MAP Kinase Kinase Kinase AT1G07150 56.798 4.51e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca05g01275 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01275 - - gmx:100776227 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01275 05 30523424 30524625 Cca05g01275 05 30523424 30524625 ECH
Cca01g00664 01 8685995 8702213 Cca05g01275 05 30523424 30524625 PCT