Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01274 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTGTTCTCACCCTCCTCCTCCCTCTTCTGCGCCAAGCCCTCCATCATTTCCTCTTCGCCGGAGGctctctcgctctctctctcACACCTCAAACCCTCCAACGTTTCAACGGCGtcgtcttgtgcttcgtcttcttcttcgtctccttctgctgcttcttcttctccttcctctccctttcgccttcgccttcCCAAGCCTCCAACTGCGTTCTCCGCCGCCTCCTCTTCTTCCACATCCCCCAACGCCACCGTTTTGAAGAGGAAGCGACCCGCTAGGCTCGACATACCCGTTTCTTCTCTCACCTTTGGGGTCCCTCCCACGCCCTCCGCGGCGGCGCTTGACGTAGCCGAGGCTGAGGGAGACGGCTTCTCCGTTTACTGCAAAAGGGGAAGGAGGGAGTACATGGAGGATCGTTACTCCGCCGGGGATAATCTACGCGGAGAACACAAACTGGCTTTCTTTGGCATATTTGATGGGCACGGAGGTGCACAGGCTGCTGAATTTGCTGCAAATAACTTAGAAAAGAATGTCTTAGATGAAGTGATCGCGAGAGATGAAGATAATTTTGAGGAGGCAGTGAAGCGTGGGTACCTAAACACTGATTCGGATTTCCTGAAGGAGGATCTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGAAACGGTAACCTCGTCGTGTCCAACGCTGGCGATTGTCGTGCCGTCATTAGCCGAGGGGGTGTTGCTGAGGCCCTAACATCTGATCACAGGCCTTCCAGGGAAGACGAAAGGGACAGAATTGAGAGCCTGGGTGGCTATGTCGATTTATGCCGCGGTGTTTGGAGGATCCAGCGTTCTCTGGCTGTGTCTAGAGGAATTGGAGATAGACACATGAAACAATGGGTAACAGCAGAACCTGAGACCAAAGTTCTCAGGATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGATCTTTTTTCATCGGGAACAACAAATCACAACCAATGCAAGCCTGTAAAAAGCTTGTAGATTTGTCTGTTTCACGAGGTTCTTTGGATGATACAAGTGTTATGCTAATCAAATTGGAGCACTATATTTGA 1170 0.4615 MSCSVAVSNSPVFSPSSSLFCAKPSIISSSPEALSLSLSHLKPSNVSTASSCASSSSSSPSAASSSPSSPFRLRLPKPPTAFSAASSSSTSPNATVLKRKRPARLDIPVSSLTFGVPPTPSAAALDVAEAEGDGFSVYCKRGRREYMEDRYSAGDNLRGEHKLAFFGIFDGHGGAQAAEFAANNLEKNVLDEVIARDEDNFEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIESLGGYVDLCRGVWRIQRSLAVSRGIGDRHMKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFFIGNNKSQPMQACKKLVDLSVSRGSLDDTSVMLIKLEHYI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01274 389 SMART PP2C_4 124 383 IPR001932 -
Cca05g01274 389 PANTHER PROTEIN PHOSPHATASE 2C 3 388 IPR015655 GO:0004722|GO:0006470
Cca05g01274 389 MobiDBLite consensus disorder prediction 44 71 - -
Cca05g01274 389 Pfam Protein phosphatase 2C 135 377 IPR001932 -
Cca05g01274 389 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 388 - -
Cca05g01274 389 CDD PP2Cc 134 385 IPR001932 -
Cca05g01274 389 MobiDBLite consensus disorder prediction 44 100 - -
Cca05g01274 389 MobiDBLite consensus disorder prediction 81 96 - -
Cca05g01274 389 SUPERFAMILY PP2C-like 135 386 IPR036457 -
Cca05g01274 389 Gene3D - 134 388 IPR036457 -
Cca05g01274 389 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169
Cca05g01274 389 ProSiteProfiles PPM-type phosphatase domain profile. 134 385 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01274 Cca-Chr5 30509130 30511671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01274 1 389 PP2C-type Phosphatase Gene Family AT2G30020 63.210 1.30e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01274 K17506 - gmx:100797934 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01274 05 30509130 30511671 Cca05g01274 05 30509130 30511671 ECH
Cca05g01274 05 30509130 30511671 Cca01g00665 01 8712940 8714986 ECH
Cca01g00665 01 8712940 8714986 Cca05g01274 05 30509130 30511671 PCT