Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01271 ATGTCTCTGAATCCGTCTCCAATGGATGTTGACAGTTTCAAGTGTTGTGGAAACAAAAAGTACAGAAGAGGGTCGAGGAAAAGAAAGCTTCTTGTCAATGAGAGAGTCGAGGTGAAGAGTGTGGAAGAGGGTTTTCTGGGTTCATGGCACCCGGGGACGGTGATCCGTTGTGAGAAGCAGAAGCGTCATGTCAAGTATGACAACATTCTGGATGATGATGGATTAGAATATCTTGTGGATGTGGTGTTTGTTTCACCTGTTTTGGACGGTGTTTGTTCTTCTTCGGATTCTGGCAATGAACGTGGATACATTAGACCACTGCCTCCTCCTCTTGAGTTTGGGGAGAAGGACCTTCAATTTGGTCGCTGTGTTGATGTGAATTATCAAGAAGCCTGGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGATGGGAGGAGCGTGTTCTTCCCGGATTTGGGTGATGAGATGAAGGTTGGAACTCATCAATTGCGGATAACTCAGGATTGGGATGAAGACACCGAGAATTGGCAGCCGCGAGGGAAGTGGGTGTTCCTTGAATTGATTGAGGAGTGCGAGAGAGAGTCCTTTATTGCAGTTTCAGTGAAGCAAATATGGTATGATGTAAGGGCTAGACAGGATTTTGACAACATAAAGCACTGGGCTTATAATGTTAAGGACTTGTGGAGAGACCTTGTACTGGAGGTGGTTGGTGATTACTATGCTCTCACACTAGAAGAAGTTTTCCCTGCCTTAAACCTTCCGGAGGATTTCTTGAAAGAAACACCAGAACTGAAGTCAGTTGAACCTACTGACAACATTCATTGTGATGCTGGACATAGCAATGTATTTGGTTCTGGCATTGGAGTGTCTAATAGCCCTATGGAAAATGGTGATGCTTCAAACTTGTTGGATAGTGATGAAAAGTGTGGTGGAATCATTCCCCTTCAAGAGGGATGTGATAAAGATCCTTCGGTGGATAGGGCATCTGAGAAAGGAATTATTTTGAAGGAAGATCCTGTATCTCCAGTTCAAGAGATCTTTCCTGACGATGGTGAAGTAACTCCAGATGCTAGCTGTAGTGGAAAGAAGAGAAAACGTAGAAGCTCATCATCCATATGTTGGAAACCTCTGATACTGACTAAGGTTGAATTCTGTCCTGATGTTATTAATCAATATATAATAGGATATGGGAGCAAGACTATAAGGGAACTTTTGAAGACAAAAGTATGGAAACATCTTGGATATCTTGGATGGACAATTGAGTGGGCTGAAAATAAATACATACGTGGGCGAGGAGGACGGTACAGGTACAAGTCACCTGATGCACAGGACAAGAAGGTTTACACCTCAATTATTCAAGTTTTGACACACATGCAAATGGGATCCAGCATGAACTCTGTGCAGGCCCAAATTGATCACAATAGGATGCATTCTACAAATGACACTAATCCTTCAACTCTGCTTTCAGATCAACCCCAAAATGACCAAGATATTCTTGTTTGTCCTTCAAATGGGGAACCTTCTCATATTGAAGTCGTAGATGAACCGGAATTTTGTCCTCAAGCTGTTGTGAAATATTACTTGAATTCATCAGAGAAACGTTGGGTTGATAAAACAAAATGGAAACTGAAAGCAAAGAAACATTTGTTAGCGGAAGGATGGACCTTTGACTACCCAACTAAGAAAAGAAAGACAACTTTGTACAACTCTCCGCAGGATCAGTGTTTGGGCACACTTCGTGGTGCATGCAGACTATACATTAAAGAAAAGATTCCTGAATGGACTAATTCTGGCATGATATCTTTGAATGCCCCAACCATGAAAGAGGAAAGTGTTGGTGATGTTGGTAGCGATGATCTATTCCAAAATTTGTCCCAATTGCTTCAAAAAGAGCCAGAATTGCTTACTGCTTCACCAGTAAGTAGATCAACTGAGAATAGAAACCATAAACGGACCAGGAATGCAAAAGCCAGCATGCCAAAGCGCCGCAGAAAAGGATTTCCTACACTGGTCCTAAGATCAAGCAAAAGGGTGCAGAAGGTGTCTGTCCCTAGTCCGTCACACCAAAGACCTCAAAATGTTCTGTCTTGGTTAATAGATAACAACATGGTGACACCAAGATGTAAGGTCTATTGCGGAGCAGGAGTTGAGAACCCTGTTGTAGTTGAAGGGAGAATAACTTATGATGGAATCAAGTGTAGCTGTTGTAAGAAAATATACGGTCTTGCTGGCTTTTTAAATCATGCTGGTGGCAGTAGTGGCTGCAGGCCTTCTGCAAGTATCTTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATACAAGTAATGCATGATCATAGAACAAGGGAAGATATAAAGAGACCATGCGTTGATCTGTGTGAGGGCGAAAATGACAACATTTGTTCTGTCTGTCAATATGGTGGTGAACTTATTTTATGTGACCAATGTCCATCTGCATTTCATAGGACGTGTCTTGGATTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGTGGGATTTGCGGCCAAATCAAAATGGAAGGGACTGAGGATGTACTTTTTCTTACTTGCATTCAATGTGAACATAAATATCACGTTGGATGCCTGAAAAATAGAGAAAAAGATGAGTCCAGAAGATATATGGAAAATTGGCTGTGTGGAAAAGAGTGTGAACAGATATATGCAGGCCTTCAAAGTCTATTAGGAAAGCCATTTGTAGTGGGTGTGAACAATCTAACTTGGACTCTGGTGAAGTTTATCGACTCTGAGAGTTGCAGTGGTGGTAATATTAAGAATGACTTATTGGCAGAGAAATACAGCAAATTCAGTGTTGCACTTTCTGTGATGCATGAGTGTTTTGAGCCCCTAAAGAACCCTTTCTCTAGTAGAGATATCATTGATGATGTTATATTCAACACTAGGTCAGAACTTAATCGATTGAGTTTCCAGGGTTTCTATACCATACTTCTGGAGAGAAATGAAGAATTGATTAGTGTCGCAACTATTAGGGTATTTGGACATAAAGTAGCAGAGGTACCTCTTGTAGGTACCAGATTACAATATCGTCGACTTGGAATGTGTCGGATTTTAATGAATGAGCTTGAGAAGAAGCTCATGCAGCTGGGAGTGGAGAGACTAGTCTTGCCTGCTGTTCCCGGTGTGCTAGAAACATGGACAAATTCTTTTGGCTTTGCAGAGATGACAAATTTTGAGAGGTCACAGTTCTTGGATTATGCTTTCCTAGATTTTCAGGAAACCGTCATGTGCCAGAAGTTCCTGACAAGGATTCCGTCTCCCGAGTCAGGTTTAACAAGAGACACACATTCCAAACCACCAGAAGTTCTCACTCTTAAATGTAGAATTGAGTTTGACAAGTCAAGTTCAGCATCTGAAGTGGACCAAGCTGAAGAGATTGACAAAAGTGGGATGAATCTGCAAGTGATGGAGTATGCTTCACCTTTGCCTAATTCCTAA 3495 0.4177 MSLNPSPMDVDSFKCCGNKKYRRGSRKRKLLVNERVEVKSVEEGFLGSWHPGTVIRCEKQKRHVKYDNILDDDGLEYLVDVVFVSPVLDGVCSSSDSGNERGYIRPLPPPLEFGEKDLQFGRCVDVNYQEAWWEGVIFDHCNGMDGRSVFFPDLGDEMKVGTHQLRITQDWDEDTENWQPRGKWVFLELIEECERESFIAVSVKQIWYDVRARQDFDNIKHWAYNVKDLWRDLVLEVVGDYYALTLEEVFPALNLPEDFLKETPELKSVEPTDNIHCDAGHSNVFGSGIGVSNSPMENGDASNLLDSDEKCGGIIPLQEGCDKDPSVDRASEKGIILKEDPVSPVQEIFPDDGEVTPDASCSGKKRKRRSSSSICWKPLILTKVEFCPDVINQYIIGYGSKTIRELLKTKVWKHLGYLGWTIEWAENKYIRGRGGRYRYKSPDAQDKKVYTSIIQVLTHMQMGSSMNSVQAQIDHNRMHSTNDTNPSTLLSDQPQNDQDILVCPSNGEPSHIEVVDEPEFCPQAVVKYYLNSSEKRWVDKTKWKLKAKKHLLAEGWTFDYPTKKRKTTLYNSPQDQCLGTLRGACRLYIKEKIPEWTNSGMISLNAPTMKEESVGDVGSDDLFQNLSQLLQKEPELLTASPVSRSTENRNHKRTRNAKASMPKRRRKGFPTLVLRSSKRVQKVSVPSPSHQRPQNVLSWLIDNNMVTPRCKVYCGAGVENPVVVEGRITYDGIKCSCCKKIYGLAGFLNHAGGSSGCRPSASIFLKDGRSLLDCMIQVMHDHRTREDIKRPCVDLCEGENDNICSVCQYGGELILCDQCPSAFHRTCLGLEDIPDGDWFCPSCRCGICGQIKMEGTEDVLFLTCIQCEHKYHVGCLKNREKDESRRYMENWLCGKECEQIYAGLQSLLGKPFVVGVNNLTWTLVKFIDSESCSGGNIKNDLLAEKYSKFSVALSVMHECFEPLKNPFSSRDIIDDVIFNTRSELNRLSFQGFYTILLERNEELISVATIRVFGHKVAEVPLVGTRLQYRRLGMCRILMNELEKKLMQLGVERLVLPAVPGVLETWTNSFGFAEMTNFERSQFLDYAFLDFQETVMCQKFLTRIPSPESGLTRDTHSKPPEVLTLKCRIEFDKSSSASEVDQAEEIDKSGMNLQVMEYASPLPNS 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01271 1164 CDD NAT_SF 995 1055 - -
Cca05g01271 1164 Gene3D - 966 1098 - -
Cca05g01271 1164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 846 900 IPR013083 -
Cca05g01271 1164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 845 IPR013083 -
Cca05g01271 1164 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 939 1097 IPR000182 GO:0016407
Cca05g01271 1164 ProSiteProfiles Zinc finger PHD-type profile. 801 846 IPR019787 -
Cca05g01271 1164 Pfam PHD-finger 803 845 IPR019787 -
Cca05g01271 1164 MobiDBLite consensus disorder prediction 347 366 - -
Cca05g01271 1164 SUPERFAMILY FYVE/PHD zinc finger 799 849 IPR011011 -
Cca05g01271 1164 SMART agenet_At_2 116 173 IPR014002 -
Cca05g01271 1164 SMART agenet_At_2 28 92 IPR014002 -
Cca05g01271 1164 MobiDBLite consensus disorder prediction 637 663 - -
Cca05g01271 1164 CDD PHD2_CHD_II 804 843 - -
Cca05g01271 1164 PANTHER PHD ZINC FINGER PROTEIN 3 1156 - -
Cca05g01271 1164 Pfam Agenet domain 34 109 IPR008395 -
Cca05g01271 1164 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 990 1063 IPR016181 -
Cca05g01271 1164 SMART PHD_3 803 844 IPR001965 -
Cca05g01271 1164 SMART PHD_3 845 897 IPR001965 -
Cca05g01271 1164 Pfam Tify domain binding domain 726 777 IPR032308 -
Cca05g01271 1164 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 1156 - -
Cca05g01271 1164 SMART ring_2 845 900 IPR001841 -
Cca05g01271 1164 SMART ring_2 804 843 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01271 Cca-Chr5 30435335 30442619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01271 30 1043 PHD Transcription Factor Family AT5G58610 35.220 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca05g01271 Agenet 4.5e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01271 - - gmx:102661511 1740.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01271 05 30435335 30442619 Cca05g01271 05 30435335 30442619 ECH
Cca01g00669 01 8798601 8805081 Cca05g01271 05 30435335 30442619 PCT