Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01261 ATGTGTGGTGTTTCCAAGGAGAAACTTTCTCAAATTGGTTTGAACATGGAGGATGAGTATGGAAAAGAAGGGATGCATCAAAAAATTTCTCTTTTGCTTGAGTTTTCAGCTGCAGATGATCTAATTGGCTTCAAAGATGCGGTTGAAAAGGAGGGTCATGATGTTGATGGGGTTGGCTTGTGGTATGGAAGGCGTGTTGGCTCAAAGAAATTAGGTTATGAAGAAAGGACACCTCTCATGGTTGCTTCTATGTTTGGAAGCCTTGGTGTATCAGCTTATATTGTTGGAACAGGTCGTGTCGATGTTAACCGGGCTAGTAGGTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCAGCTGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAGTGTTGTTGATGCCAACGGTAACCGGCCCTTTGACTTGATTGTTTCTGTGGTGAATTCAATCTTCAATCCAAGGGCAAGGTTACTACAGGCCCTGCTGGAAGGCACAGATGGTGCTGATCAGGCATGTCTCATGCTTCCGGAAGTGATTGATCAAATTGAGGAACAAAAGCAAGATATGATCACACCTCGTCTTTCAAAGGATTATCCTGTTGATCTGTCCCTTCCAGACATAAAGAATGGGATATATGGTACCGATGAGTTTAGGATGTATTCATTCAAAGTGAAGCCTTGTTCAAGGGCGTATTCTCACGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAATGCAAGGCGACGTGATCCCAGGAAATATCATTACAGCTGCGTCCCTTGTCCTGAGTTTCGGAAGGGCTCTTGCAGCAAGGGTGATGCCTGTGAGTATGCACATGGTATATTTGAGTGCTGGCTTCACCCTGCACAGTATCGGACTCGGCTTTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCCTCTCCCAGGTCATCATATTCTGCTAGTGCTTCTGCATTGGAGATGGGTTCGGTTAGCCCAATTGCACTTGGTTCTCCATCTGTCATGATGCCACCAACATCAACACCTCCTTTGACTCCATCTGGAGCATCTTCTCCAGTTACTGGATCCATGTGGTCTCAAGCCAATGTATCTGTTCCTATGCTGCAGCTTCCGAAAAGCAGATTGAAGACTGCATCAACTGCAAGAGATATTGATTCAGATATTGAACTGCTGGGGCTTGAAATTCATCGACGTAGGCAGCAGCTAATGATGGACGAGATATCAAGTCTTTCCTCTCCTTCCAACTGGAAAAATTCCGTGCCTAATAGTCCATCTTTTCCTGTTTCTTTGAATGATCATGCTGGGGAATTAAACAGGCTTTCAGGGGTGAAGCCTGCTAACCTTGATGACATCTTTGGATCACTTGATCCATCAGTTTTGTCAAAATTCCATGGAATGTCACTTGATGTTACAGGATCTCAGTTACAATCTCCAACCGGAATCCAGATGCGTCAGAATGTGAACCAGCAGCTAGGTGGCTATTCTTCCAGCCTTTCCTCTTCAAATATGAGTGGTTCGCGGTCCTTTAGGGTTGATCATCCATCCGGCGAAGCAGCCAAAGCGGCCTTGAATCCAAGAGCTGCTGCCTTTACAAAGCGAAGCCAAAGCTTCATTGAGCGCAGTGTGGTGAACCATCATTCCGAGCTTCCTTCTCCAAAGCCCTCTAACTTGTCTAACTGGGGCTCACCTGATGGAAAACTGGATTGGGCCATAAATGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGCAACAGTCCTCTAACCAAAGGGCCAGCAAATGTTGATGATGAGCCAGATGTGTCTTGGGTTAACTCACTTGTGAAGGATGCTCCACAGGAATCCGGTGAATATGGCATTGAAGATCAGCTAACGCAGCTGCCATGCCACAATGGAACAGATGCAATTCCTGCATGGTTGGAGCAATTGTACTTGGAGCACGAAATGGTGGCCTGA 2073 0.465 MCGVSKEKLSQIGLNMEDEYGKEGMHQKISLLLEFSAADDLIGFKDAVEKEGHDVDGVGLWYGRRVGSKKLGYEERTPLMVASMFGSLGVSAYIVGTGRVDVNRASRSDGATALHCAVAGGSAASAEVVKLLLDASADVSVVDANGNRPFDLIVSVVNSIFNPRARLLQALLEGTDGADQACLMLPEVIDQIEEQKQDMITPRLSKDYPVDLSLPDIKNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSSYSASASALEMGSVSPIALGSPSVMMPPTSTPPLTPSGASSPVTGSMWSQANVSVPMLQLPKSRLKTASTARDIDSDIELLGLEIHRRRQQLMMDEISSLSSPSNWKNSVPNSPSFPVSLNDHAGELNRLSGVKPANLDDIFGSLDPSVLSKFHGMSLDVTGSQLQSPTGIQMRQNVNQQLGGYSSSLSSSNMSGSRSFRVDHPSGEAAKAALNPRAAAFTKRSQSFIERSVVNHHSELPSPKPSNLSNWGSPDGKLDWAINGEELNKLRKSASFGFRSSNSPLTKGPANVDDEPDVSWVNSLVKDAPQESGEYGIEDQLTQLPCHNGTDAIPAWLEQLYLEHEMVA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01261 690 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 291 IPR000571 GO:0046872
Cca05g01261 690 MobiDBLite consensus disorder prediction 367 386 - -
Cca05g01261 690 PANTHER UNKEMPT FAMILY MEMBER 21 686 IPR045234 -
Cca05g01261 690 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 686 - -
Cca05g01261 690 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Cca05g01261 690 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Cca05g01261 690 Gene3D - 267 329 - -
Cca05g01261 690 ProSiteProfiles Zinc finger C3H1-type profile. 271 293 IPR000571 GO:0046872
Cca05g01261 690 ProSiteProfiles Ankyrin repeat profile. 109 144 IPR002110 GO:0005515
Cca05g01261 690 Pfam Ankyrin repeat 109 143 IPR002110 GO:0005515
Cca05g01261 690 SUPERFAMILY Ankyrin repeat 69 153 IPR036770 -
Cca05g01261 690 SMART ANK_2a 74 104 IPR002110 GO:0005515
Cca05g01261 690 SMART ANK_2a 109 141 IPR002110 GO:0005515
Cca05g01261 690 ProSiteProfiles Ankyrin repeat region circular profile. 109 143 - -
Cca05g01261 690 Gene3D - 24 166 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01261 Cca-Chr5 30307168 30309240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01261 1 685 C2H2 Transcription Factor Family AT5G12850 38.139 1.14e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca05g01261 Ank 5.3e-05 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01261 - - gmx:100819521 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01261 05 30307168 30309240 Cca05g01261 05 30307168 30309240 ECH