Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01260 ATGGCCGCCATCAAGCGCTCCCAGGCGAACCAGCGGCGGCACCCGGAGAGCTTCCACGCGTTCCAGCAAGGATCGGCGGCGACGTCGTTTCTGAAAGTTGAGATGAAACACTTCGTTTTGTCGATCCTGGACGATCCAATCGTGAGTCGCGTCTTCGCTGAGGCCGGGTTTCGAAGCTGCGACGTTAAGCTCGCGTTGCTTCAACCGCCTCTCCCTCCGGTTCAACCGTTTCACCGGTTCCCCCGGTCGCCTCCGGTTTTTCTCTACAACCTGGAACCGAACCGGCCTGACGAAAATTGCCGCAGGATTGCTGAGGTTCTTTTTCGGAAAAGCAAGCGGAACCCTTTGCTGATGGGCGTTTACGCGAAAAGCGCGTTGATGAGTTTCGTTGAGATGGTTGAGAAGGGTCTAGGAGGTTCGGTGTTAGGTTCGGAGATTAGGATTATTTGTTTAGAGAAGGAAATTGGGGAGTTTGTGAGGGAGGGTGGAAGTGGAGAGGAGAAGATGGGTGCGAGGTTTCAAGAGTTGGAGAACCAATGCGAGGGTTCTGATTCTGGTGTTGTTGTTAGTTTCGGGGAGATTGAGGCTTTCGTTGGGGAGGGTGTCGATGCTGATGCTGTTAGGTTTGTTGTGTCGGGGTTGACGAGGTTGTTGAAGATCCGTGGTGAGAAAGTTTGGTTGCTGGGAGTGGCGGAAACCTCTCATGCTTATTCTAAGTTCTTGGGTTTGTTTCCCAACGTGGGGAACGATTGGGATCTTCATTTGCTCACTGTCACTTCCGCTACTCCTTCCATGGAAGGACTCTACTCCAAATCCAGTTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCTACACCTGAAATTAGAAGTCCCGTAAGCTGTACAAATGCTTCTTTTACCCGTTGTGACACATGCAATGAAAAATGTGAACAAGAAGTTGCTGATATTCTGAAGGTAGGTCCTTCTACTCTGGCATCTAATTGCTCAACAAGCTCACCCTGGTTACAGAAGGTTGTTAACGTGGACACGCATAGAGGGTTGGATGTGGCAAAGACTAATGAAGAAAACACAAGTTTGAATGACAAGATCTTGGGATTTCAAAAGAAATGGAGTGATATTTGTCAGTGTCTTCATCACACAAGCTCACTACCTCAATTTGATATTTCTCAAACAAGGTCTCAAGCTCCAACACTTGAGGCTTTACGGTATGGTCCAGGTTTTAGGGAAAGCAGCAGCAGAGATCCATCACACAATGAATTCCATTGTTCTAGTCAAAATTCCTACATGCCCAAAGAGTTGCATGATATTTTTCCATCAAAGCAGTTACCATCTGTTCCATTACCTTTTGATACAGTCAGCGTTAGTACTGGAATTGATCATGTTCCAAAAGTTTCAGGGACACTGCAAATTGACTTGAAGACCCCATGGGTTGCCCCTTCCCCTATGGCGAATAAGAGTGTGCTTGACAACAGATCATCTTCATCCCCTACTCCTGTGACCACAGATTTAGGATTGGGAACATTATATACGTCAACTGCTCAAGAGCCAGATACCCCAAAACTAGAAGATCAAAGAAAGAATCTTCAGCGCTTGTCAGACTCTGTTTCTACTGATTGTGATGCTATGAATGAAAATACTTCACACCAAATTGCTAGATCTTCATGCCCTGGTTCAAATTTTGAAGGAAAATTTAATTTTGCAGATTTTAAGTCTCTTAATCGACTTCTCACAGAAAAAGTTGGCTGGCAGGATCAAGCCATATGTGCTATCAGTCAATCTTTGTCCCTTTGTAAATCAGGAGCAGGAAAGCGTAGAGGCTCACATGGTAGAGCAGACACATGCAACAAAGGAAGGCTCATGAACCAACAATGA 1878 0.4617 MAAIKRSQANQRRHPESFHAFQQGSAATSFLKVEMKHFVLSILDDPIVSRVFAEAGFRSCDVKLALLQPPLPPVQPFHRFPRSPPVFLYNLEPNRPDENCRRIAEVLFRKSKRNPLLMGVYAKSALMSFVEMVEKGLGGSVLGSEIRIICLEKEIGEFVREGGSGEEKMGARFQELENQCEGSDSGVVVSFGEIEAFVGEGVDADAVRFVVSGLTRLLKIRGEKVWLLGVAETSHAYSKFLGLFPNVGNDWDLHLLTVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPEIRSPVSCTNASFTRCDTCNEKCEQEVADILKVGPSTLASNCSTSSPWLQKVVNVDTHRGLDVAKTNEENTSLNDKILGFQKKWSDICQCLHHTSSLPQFDISQTRSQAPTLEALRYGPGFRESSSRDPSHNEFHCSSQNSYMPKELHDIFPSKQLPSVPLPFDTVSVSTGIDHVPKVSGTLQIDLKTPWVAPSPMANKSVLDNRSSSSPTPVTTDLGLGTLYTSTAQEPDTPKLEDQRKNLQRLSDSVSTDCDAMNENTSHQIARSSCPGSNFEGKFNFADFKSLNRLLTEKVGWQDQAICAISQSLSLCKSGAGKRRGSHGRADTCNKGRLMNQQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01260 625 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 615 - -
Cca05g01260 625 MobiDBLite consensus disorder prediction 487 506 - -
Cca05g01260 625 MobiDBLite consensus disorder prediction 601 625 - -
Cca05g01260 625 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 615 - -
Cca05g01260 625 MobiDBLite consensus disorder prediction 485 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01260 Cca-Chr5 30238802 30244399 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01260 - - ccaj:109811197 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01260 05 30238802 30244399 Cca05g01260 05 30238802 30244399 ECH
Cca05g01260 05 30238802 30244399 Cca01g00682 01 8956210 8969622 ECH
Cca02g00623 02 13878581 13882854 Cca05g01260 05 30238802 30244399 ECH
Cca01g00682 01 8956210 8969622 Cca05g01260 05 30238802 30244399 PCT