Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01259 ATGGCAACCACAACTAGGGACCCCTTTCTCAATAAAATGTCTAAACAGCACTTCAAAGTGTGTTTTTGTTTCAGGAGAATGTTTAGGCTCAACGTGGCTGAACCTCCTGAGGAAATCAACACTATTTTTGGTAAGTATTCAGAGAATGGCGTCATGAGCATGCATGACCTGTGCGATTTCTTGGTTGAATTTCAAGGAGAAGAAGAAGAAGGTGATGCCACCAAGAAACATGCTCAAACCATTTTTGACAATCTCAAGCATCTCAACATATTTCAGAGGAAAGGCCTTCATGTTGATGCCTTCTTCCGTTATCTCTTAAGTGACATTAATGGTCCCCTTGATGAGGTGCACCATGACATGACTTATCCCTTGGCTCATTATTTCTTATACACAGGCCACAACTCCTACTTAACTGGAAATCAAGTTAGCAGTGCTAGCAGTACTTCCGCGATAATAAAGGCATTGAAGAAAGGAGTTAGAGTAATTGAGCTAGATTTATGGCCAAATTCCAGAGGCGATGATGTGCTAGTTCATCATGGAGGGACTCTGACTTCCTCAGTGAAACTCAAAGCTTGTCTGAATGCCATTAAGGACTACGCATTTGTTGCCTCTCCGTATCCTGTTATTATAACTTTTGAAGACCATATAACAAGATCTCTACAAGACAAAGTGGCCAAGATGCTCGATGACATATTTGGAGACATGCTATTTCGCCCTGAATATTCACAGCTAATGAGCGAATTCCCTTCTCCAGAAGAATTGAAGGGAAAAATTTTGATTTCAACTAAACCGCCAGAGTCTCGTGAAATGACGCCAGAGGAAGAAGCACAAAGGCTTGAGGACAATAACAAGGATGATTCAGATGATCAAGATTCAGATGATGATACTCTTGAATACAGGAATTTGATTTCCATTCGTGCTGGGAAGCCAAAAGGTAAGTTAAAACACTGGTTGATTGATCATGAACAAGTTAGGCGTCTTAGCTTGAGTGAGCAAGAGCTTGAAGATATCGCCAAAAATTATGGAACTCAAATTGTCAGATTCACCCAAAGAAATTTGCTTAGAATATACCCAAAGGGTACACGACTGAACTCGTCTAATTACGATCCCATGATTGGATGGATGCACGGAGCTCAAATGGTAGCATTTAATATGCAGGGAAGAGGGCACTTTCTTAGTGTGATGGAAGGAATGTTCAGAGCCAATGGTGGTTGTGGTTACGTTAAGAAACCAGACATATTGTTGAATGTTGGTCCCAACAATGAGGTTTTTGATCCAAGAGCAAGTCGAACAATCCAGAAAACTCTTCAGGTTTTGGTATACATGGGTGATGGTTGGCGTTTTGATTTCCGCCATACACATTTCGATTTTTATTCTCCTCCTGACTTCCAAGTACAGGTTAGTATTCATGGTGTTCCAGCTGATAAGGGTAGCAAACACACTAGAACAATTGAAGATGATTGGATACCAGTATGGAACGAGGCCTTCATCTTTCCATTGACTGTTCCAGAATTGGCCCTTTTATACATAAAAGTTGTGGAGCGTGACTATTCCGGGAATCATGATTTTGGTGGACAAACATGTTTACCTGTCTCTCAGCTAAGGCCAGGAATTCGTGCAGTTCGTTTGCGTAATCGCAAGGGTGAACTTTACAAGTCTGTAAGGCTTCTCGTCCAATTTGATTTTCTTCATAATTAA 1698 0.4099 MATTTRDPFLNKMSKQHFKVCFCFRRMFRLNVAEPPEEINTIFGKYSENGVMSMHDLCDFLVEFQGEEEEGDATKKHAQTIFDNLKHLNIFQRKGLHVDAFFRYLLSDINGPLDEVHHDMTYPLAHYFLYTGHNSYLTGNQVSSASSTSAIIKALKKGVRVIELDLWPNSRGDDVLVHHGGTLTSSVKLKACLNAIKDYAFVASPYPVIITFEDHITRSLQDKVAKMLDDIFGDMLFRPEYSQLMSEFPSPEELKGKILISTKPPESREMTPEEEAQRLEDNNKDDSDDQDSDDDTLEYRNLISIRAGKPKGKLKHWLIDHEQVRRLSLSEQELEDIAKNYGTQIVRFTQRNLLRIYPKGTRLNSSNYDPMIGWMHGAQMVAFNMQGRGHFLSVMEGMFRANGGCGYVKKPDILLNVGPNNEVFDPRASRTIQKTLQVLVYMGDGWRFDFRHTHFDFYSPPDFQVQVSIHGVPADKGSKHTRTIEDDWIPVWNEAFIFPLTVPELALLYIKVVERDYSGNHDFGGQTCLPVSQLRPGIRAVRLRNRKGELYKSVRLLVQFDFLHN 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01259 565 SUPERFAMILY EF-hand 24 118 IPR011992 -
Cca05g01259 565 SMART C2_3c 435 543 IPR000008 -
Cca05g01259 565 Gene3D - 34 116 - -
Cca05g01259 565 Pfam C2 domain 460 536 IPR000008 -
Cca05g01259 565 SMART plcy_3 299 415 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01259 565 CDD C2_PLC_like 434 562 - -
Cca05g01259 565 Pfam Phosphatidylinositol-specific phospholipase C, X domain 120 263 IPR000909 -
Cca05g01259 565 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 328 414 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01259 565 MobiDBLite consensus disorder prediction 255 295 - -
Cca05g01259 565 PRINTS Phospholipase C signature 123 141 IPR001192 GO:0035556
Cca05g01259 565 PRINTS Phospholipase C signature 149 169 IPR001192 GO:0035556
Cca05g01259 565 PRINTS Phospholipase C signature 247 264 IPR001192 GO:0035556
Cca05g01259 565 PRINTS Phospholipase C signature 353 374 IPR001192 GO:0035556
Cca05g01259 565 PRINTS Phospholipase C signature 374 392 IPR001192 GO:0035556
Cca05g01259 565 PRINTS Phospholipase C signature 529 539 IPR001192 GO:0035556
Cca05g01259 565 MobiDBLite consensus disorder prediction 267 285 - -
Cca05g01259 565 ProSiteProfiles C2 domain profile. 409 545 IPR000008 -
Cca05g01259 565 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 326 412 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Cca05g01259 565 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 562 IPR001192 GO:0035556
Cca05g01259 565 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 118 263 - -
Cca05g01259 565 Gene3D C2 domain 429 565 IPR035892 -
Cca05g01259 565 Gene3D Phosphatidylinositol (PI) phosphodiesterase 117 428 IPR017946 GO:0006629|GO:0008081
Cca05g01259 565 SMART plcx_3 118 263 IPR000909 -
Cca05g01259 565 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 435 562 IPR035892 -
Cca05g01259 565 SUPERFAMILY PLC-like phosphodiesterases 118 416 IPR017946 GO:0006629|GO:0008081
Cca05g01259 565 Pfam Phosphoinositide-specific phospholipase C, efhand-like 37 108 IPR015359 -
Cca05g01259 565 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 15 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01259 Cca-Chr5 30171331 30178018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01259 13 563 Acyl Lipid Metabolism Gene Families AT3G55940 53.547 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01259 K05857 - gmx:100817915 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01259 05 30171331 30178018 Cca05g01259 05 30171331 30178018 ECH
Cca05g01259 05 30171331 30178018 Cca05g01599 05 35289298 35294112 ECH