Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01255 ATGCACATGAGCACTGAGGCCACCACATCACGAGCAATGGATGAAGATTTGGAGAACAACAGGAATGCAAATTCGGCGATGGTGAGAAAGAAGTCAGAAATAGCTGTGGTCACAAACAATAACGCTCGTTTCCAAATGCTTAGAAATTTCATCACCAATTTGAAAGAGGTCATCTTCGGCACTAAGCTTGTTGTGCTTTTCCCCGCAGTTCCTTTGGCTGTAGTTGCAAATTTTTGTAGCTTTGGAAGGCCTTGGATATTTGCTTTCAGCTTGCTTGGACTTGCTCCCCTAGCTGAACGTGTCAGCTTCCTGACTGAGCAAATTGCATATTACACTGGCCCAACAGTTGGAGGGCTTCTGAATGCAACTTGTGGAAATGCAACAGAGATGATCATAGCATTATTTGCACTTCACCAGAACAAAGTAAATGTTGTCAAGTTCTCCCTGCTCGGTTCCATTCTCTCAAACCTTCTCTTGGTTCTTGGCAGTTCACTTCTCATTGGTGGTTTAGCCAATCTTAAGAGGGAGCAGAGATATGATAGAAAACAGGCAGATGTAAATTCACTGCTATTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTACTGTTCAAATTCGCGTTGGGAGGGGGCGATCATTCTATAGCCATTAACACTCTCCAGTTGTCCAGAGCAAGCAGCGTTGTTATGCTTCTAGCATACGTTGCTTACATCGTCTTCCAATTAAAAACTCATCGAAAACTGTTTGATGCACAAGAGGAGGACGAAGATGAAGAGAAGCCTGTGATAGGATTTTGGAGTGCATTTACCTGGTTGGTGGGTATGACATTGGTCATATCTGTACTTTCTGAATATGTTGTGGGAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTAAGTTTCATCAGCATAATTTTGCTACCAATTGTTGGAAATGCTGCAGAACATGCTGGTTCAATCATATTTGCTTACAAGAACAAGTTGGACATATCTTTGGGAGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTAGTTGTTGCATGGATAATGGGTATACGAATGGATTTGGACTTCAGTCTTCTTGAAACTGGATGTCTCGCTTTTACAATTATAGTTACAGCCTTCACTTTACAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTACTCTATGTTACATTGTCATTGCTGCATGTTTTTTTGTTCTTAAAACTCCTCTAATTGAGCAATATCCTAGGGGCAATTTTGGAGGTAAACCATCCTTTGAAGCCATTATAACTTGA 1314 0.417 MHMSTEATTSRAMDEDLENNRNANSAMVRKKSEIAVVTNNNARFQMLRNFITNLKEVIFGTKLVVLFPAVPLAVVANFCSFGRPWIFAFSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALFALHQNKVNVVKFSLLGSILSNLLLVLGSSLLIGGLANLKREQRYDRKQADVNSLLLLLGLLCHLLPLLFKFALGGGDHSIAINTLQLSRASSVVMLLAYVAYIVFQLKTHRKLFDAQEEDEDEEKPVIGFWSAFTWLVGMTLVISVLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAYKNKLDISLGVAMGSATQISMFVVPLSVVVAWIMGIRMDLDFSLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLTLCYIVIAACFFVLKTPLIEQYPRGNFGGKPSFEAIIT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01255 437 Pfam Sodium/calcium exchanger protein 85 242 IPR004837 GO:0016021|GO:0055085
Cca05g01255 437 Pfam Sodium/calcium exchanger protein 268 409 IPR004837 GO:0016021|GO:0055085
Cca05g01255 437 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 10 421 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cca05g01255 437 TIGRFAM caca2: calcium/proton exchanger 49 411 - -
Cca05g01255 437 TIGRFAM cax: calcium/proton exchanger 68 411 IPR004798 GO:0006816|GO:0015369
Cca05g01255 437 Gene3D - 260 412 IPR044880 -
Cca05g01255 437 Gene3D - 114 254 IPR044880 -
Cca05g01255 437 PANTHER VACUOLAR CATION/PROTON EXCHANGER 10 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01255 Cca-Chr5 30126647 30130558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01255 9 419 Antiporters AT2G38170 65.166 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01255 K07300 - gmx:100802344 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01255 05 30126647 30130558 Cca05g01255 05 30126647 30130558 ECH
Cca01g00691 01 9103580 9109529 Cca05g01255 05 30126647 30130558 PCT