Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01254 ATGGCGGCTTCCGATGGAAGCGAGTACTACGAAATAGGATCGATCGGAAGCGAGAGCTTCGCGATGCCTTCCAACGCCGAGACCGTGGCGGAGGACGAGGAGGAGCTCCAGTGGGAGGCGCTCGCCAGGCTGCCGTCGCAGAAGCGCATCAACTTCGCGCTCCTCCGCGCCTCCTCTTCCCGCCGGCAAGTTCCGACGCAAGGTTCCGCTCCGGATAACTTAATCGATGTCCGGAAGCTGAGTCGCTCGCACCGCGAGCTTGTCGTTAAGAAAGCACTCGCCACCAACGAACAAGACAACTACCGCCTCCTCGCCTCCATCAAAGAACGCCTCGACAGGGTTGGATTGGAGGTGCCGAAGATAGAAGTGAGGTACAAGAACTTGAACGTCTCTGCTAACACTTGGAAAACGTCCAAGACGCGAAACCAAACACAGTCGATCACGAGACTAAGGTTAGCCTCGTGTGCAGTCCTATCTCGGTTAGCCATGGCTCAGACCTTGGTAGTTTTAAAATGCGTTACTCTTAAAAAATTTCTTCTTACTTTTCTGTTTTTACAGAAAActggcactataacatacaatggccatgcggcagacgagttttatgttcgacggacttctgcatatattagccaaacagataatcacattgctgaattgacagtacgagaaactttggacttcggtgctagatgtcaaggTGCAAAAGAAGGTTTTGCAGCATATACGAATGAACTGGGCCGCCTAGAGCATGAAAGGAACATACGGCCTAGTCCAGAAGTTGACGCGTTTATGAAGGCATCATCCGTTGGAGGTAAAACACACAGTGTGAATACAGATTACATTttgaaagtgcttggtctcgatatatgttcagacacaatagttggcaacgatatgcttcgaggggtctccggcggccaaaggaagagagttacaacaggagaaatgattgttggtccaagaaaaacactatttatggatgaaatatcaactggtcttgatagctctactacgtaccagatagtaaaatgcataaagaattttgttcaccagatggaggctacagtactcatggctctccttcagccagctcctgaaacatttgagctatttgatgatctggtgcttttgtcagaagggtacgtagtatatgaaggccctcgagaagatgtgctcgagttttttcagtcattaggttttcaacttccacctcgtaaagggatcgcagactttctccaggagGTGACCTCTAAAAAGGATCAAGCACAATACTGGGCTGATCCTTCAAAGCCATATGAGTTTGTCTCAGTTTCCGAGATTGCGCAAGCCTTTAGAAATTCCAAATTTGGAAAGTATGTGGAATCCATGCAGAGTCATCCATTTGATAAATCAAAATGTCATTCTTCAGCTTTGGCTAGAACTAAATATGCTGTGTCAAAGTGGGAGATGGCTAAAGCTTGCTATGCACGAGAAGTCCTTTTGATCAAAAGACATAGCTTTCTTTATATATTTAGGACCTGCCAGGTTGCTTTTGTTGGATTTGTCACATGTACAGTATTCCTGCGTACAAGGTTACATCCCACAGATGAGGTTTACGGACACCTTTATCTTTCtgctctattttttggggtggttcacatgatgtttaatgggttttctgagctgcctcttatgatcactcggcttccagtattttataagcaaagagacaatttattctatcctgcatgggcgtggtctctcgccagttggatactacgtgtaccgtattccgtggttgaggctgttatatggactcttgttgtatattatactgttggatttgctccagcagcgggaagGTTTTTTCGCTACATGTTTCTACTTTTTGTAATGCATCAAATGGCATTAGGTCTCTTCCGGATGATGGCTGCTTTGGCACGAGATATGGTTCTTGCTAATACATATGGATCGGCTTCACTAATGCTTATATTCGTACTGGGAGGATTTATTATACCTAAAGGAATGATTAAACCAtggtggatttggggctactggttgtcaccccttacctatggtcaacgagctattacagttaatgaatttACTGCTTCAAGATGGATGAAGAAATCTGCAACTGGGGACACCACAGTTGGTTACAATATCCTCCACTCAAACAGCCTACCAAGTGAGGACCGCTGGTATTGGATTGGTCTTGCAGTTTTAATCCTCTATTCATTTTTTTTCAACAACATGGTCACTGTGGCCTTAGCCTATCTGAATCCAATTCGAAAACCACGAACAGTTATGCCTTCTGATGATGACTCGGAAAAGAATTCTTCCAGAGATGTCAGTAATAAGGTCAATGAAATGAGTACCCGTGCCAGACCCGCAAGAGAGGACAGTACTaagaaaggaatgattcttccatttcaaccactgacaatgacatttcataatgtcaattattttgttgatatgccaaaggcgataagcaagcaaggcgtacctgaaactcggttgcagctcttgacaaatgtcagtggagtattctcacctggtgtccttacagcattagtggggtctagtggggctggaaagaccaccttaatggacgtactggctggcaggaaaactggagggtacatagaaggggaaattaaaatttcgggttacccaaaagagcaacgaacatttgccagaatatcaggatatgttgaacaaaatgatatacattctcctcaagtaacaattgaggagtcgctattgttttcttcatctcttcgccttccaaaggaagttggatttgctaaaagactcgaatttgttgaacaagtgatgaaactagttgagcttgatactttgaaacatgctttggttggtatgccaggtagctctggcttatcaacagagcagagaaagcgattaacaatagcagtggagcttgtagcaaacccttccattatttttatggatgaacctacttctggacttgatgcacgtgcagcagctattgtaatgcgtgctgttcgaaataccgttgatactggaagaactgtggtttgcactatacatcaaccaagtattgatatatttgaagcatttgatgaaTTACTTCTTATGAAACGTGGGGGACGAGTAATATATGGAGGAAAGCTTGGTGTGCAGTCACAGATAATGATAGACTACTTTCAGGGAATCAATGGAATTCCCCCCATTCCAAAGGGCTACAATCCGGCTACCTGGGTGCTTGAGGTTAGTACACCTGCTACTGAAGAGAGGATTGGTGCAGATTTTGCTGAAATTTACAGGAATTCAGAGCAATACAGGGGGGTGGAGTCTTCTATTTTGCAATTTGGACATCCTCCTTCAGGCTCTGAACCATTGAAGTTTGACACCGAATATTCACAAAACCTGTGGAACCAATTACTTCGAtgcttatggaaacaaaatcttgtgtactggagaagtccatcgtataatgccatgaggttatacttcaccacaataagtgctttgatatttggtaccgtattttgggatattggttcaaaaagGGAATCAACTCAAGAGCTGTTTGTAGTCATGGGAGCTCTTTATTCTACATGCATGtttgttggggtaaacaactcttcttcagtacagccaattgtttcaatagaaaggactgtgttttatagagagaaagctgctggaatgttttctccaatcgcttatgcggcagcccaggggcttgtagagataccatatattgctgttcagacaataatatttggtataatcacatatttcatgatcaattttgaaaggacagcTGggaagttttttctttatctcgtgttcatgttcctaacgttcacctacttcaccttctacggcatgatggctgttggtgttacaccttcccaacatctagcagctgttatttcttcagccttttactccctgtggaatcttctttcaggttttctcatcccaaaagcgAGTATTCCCGGCTGGTGGATTTGGTTCTATTATATCTGCCCGATTGCATGGACGTTACGTGGTATTATCACATCCCAGCTTGGTGACGTGGAAACCAAAATTGTGGGACCTGGATTTGAGGGCACCGTGAAAGAGTATTTAGCTGTTTCTCTTGGATTCGATGCTAAAATCAACGGATTTTCTTCTGTGGGTATTTCAGTGGTCGTGCTTCTTGGATTTATTGTGGTGTTCTTTGGTTCTTTCGCTGTATCAGTCAAAATCTTGAATTTCCAAAAGAGATGA 4248 0.2345 MAASDGSEYYEIGSIGSESFAMPSNAETVAEDEEELQWEALARLPSQKRINFALLRASSSRRQVPTQGSAPDNLIDVRKLSRSHRELVVKKALATNEQDNYRLLASIKERLDRVGLEVPKIEVRYKNLNVSANTWKTSKTRNQTQSITRLRLASCAVLSRLAMAQTLVVLKCVTLKKFLLTFLFLQKTGTITYNGHAADEFYVRRTSAYISQTDNHIAELTVRETLDFGARCQGAKEGFAAYTNELGRLEHERNIRPSPEVDAFMKASSVGGKTHSVNTDYILKVLGLDICSDTIVGNDMLRGVSGGQRKRVTTGEMIVGPRKTLFMDEISTGLDSSTTYQIVKCIKNFVHQMEATVLMALLQPAPETFELFDDLVLLSEGYVVYEGPREDVLEFFQSLGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYEFVSVSEIAQAFRNSKFGKYVESMQSHPFDKSKCHSSALARTKYAVSKWEMAKACYAREVLLIKRHSFLYIFRTCQVAFVGFVTCTVFLRTRLHPTDEVYGHLYLSALFFGVVHMMFNGFSELPLMITRLPVFYKQRDNLFYPAWAWSLASWILRVPYSVVEAVIWTLVVYYTVGFAPAAGRFFRYMFLLFVMHQMALGLFRMMAALARDMVLANTYGSASLMLIFVLGGFIIPKGMIKPWWIWGYWLSPLTYGQRAITVNEFTASRWMKKSATGDTTVGYNILHSNSLPSEDRWYWIGLAVLILYSFFFNNMVTVALAYLNPIRKPRTVMPSDDDSEKNSSRDVSNKVNEMSTRARPAREDSTKKGMILPFQPLTMTFHNVNYFVDMPKAISKQGVPETRLQLLTNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGYPKEQRTFARISGYVEQNDIHSPQVTIEESLLFSSSLRLPKEVGFAKRLEFVEQVMKLVELDTLKHALVGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVQSQIMIDYFQGINGIPPIPKGYNPATWVLEVSTPATEERIGADFAEIYRNSEQYRGVESSILQFGHPPSGSEPLKFDTEYSQNLWNQLLRCLWKQNLVYWRSPSYNAMRLYFTTISALIFGTVFWDIGSKRESTQELFVVMGALYSTCMFVGVNNSSSVQPIVSIERTVFYREKAAGMFSPIAYAAAQGLVEIPYIAVQTIIFGIITYFMINFERTAGKFFLYLVFMFLTFTYFTFYGMMAVGVTPSQHLAAVISSAFYSLWNLLSGFLIPKASIPGWWIWFYYICPIAWTLRGIITSQLGDVETKIVGPGFEGTVKEYLAVSLGFDAKINGFSSVGISVVVLLGFIVVFFGSFAVSVKILNFQKR 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01254 1415 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 1415 - -
Cca05g01254 1415 Pfam Plant PDR ABC transporter associated 701 763 IPR013581 -
Cca05g01254 1415 Gene3D - 173 399 IPR027417 -
Cca05g01254 1415 CDD ABCG_PDR_domain2 807 1045 IPR034003 -
Cca05g01254 1415 Pfam ABC transporter 185 330 IPR003439 GO:0005524
Cca05g01254 1415 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 1415 - -
Cca05g01254 1415 Pfam ABC-2 type transporter 363 413 IPR043926 GO:0140359
Cca05g01254 1415 Pfam ABC-transporter N-terminal 83 132 IPR029481 -
Cca05g01254 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1046 IPR027417 -
Cca05g01254 1415 SMART AAA_5 847 1039 IPR003593 -
Cca05g01254 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 403 IPR027417 -
Cca05g01254 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 123 405 IPR003439 GO:0005524
Cca05g01254 1415 MobiDBLite consensus disorder prediction 763 796 - -
Cca05g01254 1415 Pfam ABC transporter 838 990 IPR003439 GO:0005524
Cca05g01254 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 816 1062 IPR003439 GO:0005524
Cca05g01254 1415 MobiDBLite consensus disorder prediction 763 778 - -
Cca05g01254 1415 Gene3D - 823 1053 IPR027417 -
Cca05g01254 1415 Pfam ABC-2 type transporter 1136 1348 IPR013525 GO:0016020|GO:0140359
Cca05g01254 1415 Pfam ABC-2 type transporter 486 696 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01254 Cca-Chr5 30109303 30125740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01254 835 1022 Calmodulin-binding Proteins AT2G36910 28.061 9.64e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01254 K08711 - gmx:100816324 2390.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00693 01 9113950 9130073 Cca05g01254 05 30109303 30125740 PCT