Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01250 ATGAACCCGCTAACCCTAGTGAAGCGCATTCAGAATATAAATTCCAAAGAAGCTTCACTAGGCATCGGCGAAGATGCTTCCTGGCACGCCAAGTACAAAGATTCCGCTTACGTCTTCGTCGGCGGCATCCCCTTCGATCTCACCGAGGGTGACCTCCTCGCCGTTTTCGCTCAGTACGGGGAGGTTGTCGATGTCAATCTCGTGAGGGACAAGGGCACCGGCAAATCCAAGGGTTTTGCGTTCCTTGCATACGAGGATCAACGAAGCACGAATCTCGCTGTGGATAATCTGAATGGGGCGCAGGTGTTGGGTAGGATTATTAGGGTGGATCATGTTgataagtataagaagaaggaagaggaagatgaagaGACGGAGCGGCAGAAGAGGGAGGCGCGTGGGGTTTGTCGTGCTTTCCAAAGGGGCCAATGTACTCGCGGAGCAAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAACACAGGTTGGGGTCGTGCTGAAGACAATCCAAAATGGGGTCACGACAAATTTGAGGGTCCCAAGAAAGAGGGAAGATATGGTAACAATGAATCAACTCATATTCCAGAAACTAGAGACAGAGATTCACGATTTAGAGCCCGTGACAATGATATTGAATTACACCACCAACCAAAGAGAAGTGATAGAAGAGAGAAGACAATGCGATTGCACGATGATTATGATAAATTTGagggaagagaaaataacagaagagaagaaaagagatcaagaaggcatgaagatgatgaaTTTGAACGTAAGTTGAGTGAAGATCGATATAGGAGAGAAGAAAAAAGATTAAGGGATGACTACGCAGGTACGGAGCTTGACCCAAAAGAGCATCGCGGAAGGGAAGACAAGAGGTCAATAAAGCCAGATGGTGTTGAGTTTGAACCCAAGTCGCGAGATTCTGATCCAAGGGAAGATAAAAGATCCCGTAAGAAGGATGATGATGATTTTGTAAGGAAGTCAAGAGAACCCCATAGTAATAGGGAAGACAGGAGATCACGAAAGCACACTGAAGATGAATCTGCACCAAGGTCAAGAGAAGATTATGATAGGAAGCAAGATAACAGATCACATAGAAATGATAGAGATCGAACTGAGTCAAAAGCAAGATATGACTTTGACACGAGAGAAGAGAAAAGGTCTAGAAGGTAA 1182 0.4239 MNPLTLVKRIQNINSKEASLGIGEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGQCTRGASCKFSHDEQRAANTGWGRAEDNPKWGHDKFEGPKKEGRYGNNESTHIPETRDRDSRFRARDNDIELHHQPKRSDRREKTMRLHDDYDKFEGRENNRREEKRSRRHEDDEFERKLSEDRYRREEKRLRDDYAGTELDPKEHRGREDKRSIKPDGVEFEPKSRDSDPREDKRSRKKDDDDFVRKSREPHSNREDRRSRKHTEDESAPRSREDYDRKQDNRSHRNDRDRTESKARYDFDTREEKRSRR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01250 393 Gene3D - 133 256 - -
Cca05g01250 393 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 276 - -
Cca05g01250 393 Pfam CCCH-type zinc finger 135 155 IPR041367 -
Cca05g01250 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Cca05g01250 393 SUPERFAMILY CCCH zinc finger 133 155 IPR036855 GO:0046872
Cca05g01250 393 MobiDBLite consensus disorder prediction 169 393 - -
Cca05g01250 393 Coils Coil 115 135 - -
Cca05g01250 393 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Cca05g01250 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Cca05g01250 393 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Cca05g01250 393 MobiDBLite consensus disorder prediction 161 393 - -
Cca05g01250 393 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Cca05g01250 393 SMART rrm1_1 37 110 IPR000504 GO:0003723
Cca05g01250 393 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 276 - -
Cca05g01250 393 Gene3D - 26 132 IPR012677 -
Cca05g01250 393 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01250 Cca-Chr5 30063401 30069356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01250 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 9.79e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01250 K13107 - gmx:100792988 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01250 05 30063401 30069356 Cca05g01250 05 30063401 30069356 ECH