Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01246 ATGGTGAGAGGTGGAAGTCATGGTGCTAATGACTTTCAAATTTATGGGTGCGAAAGCAAGCCTTCTTTGACTACAGCCATAGGCATAGATAGATTCTTGCGTGGCCACTTCCCACACCAGCAACAACAGCTAGCAAAGAACAATGATGCAAGTGTTTTTGCTGAAGAGGCTTTGAAATGGACAAACCCCAACCAAACCCCTAAACTCTGCCTGAAAGATATCCAAGTTTCAGGTAAGAATGTGAAACTGGTGGGAAGGAGAAGCAAGAAACACTCTTCTGTGCCCTGGATCAAAGGACAGTGGAATAAAGAAGAGGACAGGAAATTGATAAGGTTGGTGAAGATATATGGTCATAGAAAATGGGCTGAAATAGCAGAGAAGTTGGAGGGAAGGGTTGGCAAGCAGTGTCGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAATGAAGAAGAAGAGAAGATACTAGTAGATAGCCATGCAAGGCTGGGAAATCGATGGTGTGAGATAGCAAAACTTATTCCAGGAAGATCAGAGAATGCCATAAAGAACCATTGGAATGCCACCATAAGGAGACAGAATTCAAAGAGGAAGAACAAGAAAACAAAGAGATCTAATGGAAAGCCACATTCCTCTGTACTTGAAGACTATATCAGAAGCAAGACCACCTCCATCAACCCCAAACCTGGCATCATCACTGCCACAGATACAAACCTTACAACAACACTCTCACAGGACAATGCACCAAACCCTAATTTAAACCCTGTGTTCCCTGAACCTTTTGTTAATGAAGCACTCTTCATGCAACAAGTTTTCATGGATAATAATCAGAATCATAGGTCACTTGACAACGTTGAAGCCTCTAAGTACAGCTCCAAGATGTGTCCAACTCCAATCTCATACTTAGATTATTGTCAAACAAATGTTGATGATGCGGGTGAATGTGGATTTGTGTATTCCCTCCAATACCAAGATAACATGCACTTGATCAATGATAGTCTCTTCCCTAGAGAGACTCACACTAGCCACTTAAATTACCTTCATTCAGATCCTTATCTGTCTCACTCACTCAATGTGGAACCTGGTTATGGGAATCAAAACCTGAACATAGATTTTCGTCATCATGGTTGTTCACAAGGAAAAGCAGAAATGGATTTGATAGAGTTTGTTTCTTCTTAG 1194 0.4104 MVRGGSHGANDFQIYGCESKPSLTTAIGIDRFLRGHFPHQQQQLAKNNDASVFAEEALKWTNPNQTPKLCLKDIQVSGKNVKLVGRRSKKHSSVPWIKGQWNKEEDRKLIRLVKIYGHRKWAEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWNEEEEKILVDSHARLGNRWCEIAKLIPGRSENAIKNHWNATIRRQNSKRKNKKTKRSNGKPHSSVLEDYIRSKTTSINPKPGIITATDTNLTTTLSQDNAPNPNLNPVFPEPFVNEALFMQQVFMDNNQNHRSLDNVEASKYSSKMCPTPISYLDYCQTNVDDAGECGFVYSLQYQDNMHLINDSLFPRETHTSHLNYLHSDPYLSHSLNVEPGYGNQNLNIDFRHHGCSQGKAEMDLIEFVSS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01246 397 CDD SANT 101 144 IPR001005 -
Cca05g01246 397 SUPERFAMILY Homeodomain-like 95 191 IPR009057 -
Cca05g01246 397 Pfam Myb-like DNA-binding domain 101 159 - -
Cca05g01246 397 Gene3D - 152 219 - -
Cca05g01246 397 PANTHER MYB PROTEIN-RELATED 4 379 - -
Cca05g01246 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 199 IPR017930 -
Cca05g01246 397 MobiDBLite consensus disorder prediction 196 218 - -
Cca05g01246 397 Gene3D - 97 149 - -
Cca05g01246 397 PANTHER MYB TRANSCRIPTION FACTOR 4 379 - -
Cca05g01246 397 ProSiteProfiles Myb-like domain profile. 145 195 IPR001005 -
Cca05g01246 397 ProSiteProfiles Myb-like domain profile. 98 144 IPR001005 -
Cca05g01246 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 148 IPR017930 -
Cca05g01246 397 MobiDBLite consensus disorder prediction 196 212 - -
Cca05g01246 397 SMART sant 97 146 IPR001005 -
Cca05g01246 397 SMART sant 149 197 IPR001005 -
Cca05g01246 397 CDD SANT 152 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01246 Cca-Chr5 30036106 30037744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01246 97 294 MYB Transcription Factor Family AT5G11050 50.476 2.56e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01246 Myb_DNA-bind_6 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01246 K09422 - gmx:102666818 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01246 05 30036106 30037744 Cca05g01246 05 30036106 30037744 ECH