Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01242 ATGGATGTAAAATTTGCGAGAAGGAATGAACGAATTGGTGGGACAACATGTGTCTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGCAGGTTCTTGCACAGTGGAACACCCTCACTTCATACTACCTATCATAATTCCAATACTGCTCATAGATATGGAAAAAGGACTCATTCCTCATCTGAGAACACCCCCAGATATGACAAAAAGTCAGTGTTGGTTAGAAAAAGTGAAGACAGAGATGGAACGAGTGTTGCTAAGGCTTCCAAGAAACCATCACCATCATCAACTGTATGTAAATACTGGATAAACAACAATTGTGTCCATGGTGAAAAGTGTCAGAATGTGCATTCATGGTTTTGTGGTGATGGGTTTTCCATATTGGCAAAGCTTCAACAGCACAAAAAGGTTATCACTGGCATTGTGCTTCCTGTTGGATCCGACAAACTTTATTCTGGCTGTACTGATGGGACAGTTTGTATATGGGACTGCCATACTGGTCAGTGTGTTAGAGTCATAAATCTTGGTGCTGAAGTCACATCTTTAATCAATGAGGGGCCATGGATTTTTGTTGGTTTAAAAAATGCTGTCAAGGCTTGGAATATTCAGAACATTACGGAGTTTACTCTCAATGGACCTAAAGGAAGAGTCCTTGCCATGACTGTTGGCAATGATACACTTTTTGCTGGAGCCGAGGATGGTGCCATTGCTGCCTGGAGAGGAAGCTCTGAAGCTAAGTCTCCTTTTGAACTGGTTGCTTCACTAACTGGTCACACTAAAGCAGTGGTTTGCCTGACTGTTGGAGGAGGCAAGAGGCTGTACTCAGGGTCCATGGACCACAGCATAAAGGCCTGGGACATGGACACATTACAGTGTACAATGACACTCAATGAGCATACTGATGTAGTCACATCCCTTATTTGTTGGGACCAATTTTTGTTATCAAGTTCATCTGACTGCACAACTAAGGTCTGGGCTGCTTTTGAAGAGGGAACATTGAAAGTGACATATACACACAAAGAGGAAGATGGTGTTGTTTCGCTTTTTGGGATGGCTGATGCAGAAGGCAAGCCAATATTGTGTTGCTCATGCAGAGACAGTTCAGTTCGGTTGTATGAATTGCCATCATTTTTAGAGAGGGGTCGTTTATTTGGTAAGAAAGAGGTTGCATCAATTGAGTTAGGTCCTGGTGGGCTCTTCTTCACCGGAGATGGGACTGGCTTGCTGACGGTGTGGAAATGGTTGGAGCAACCCAACGTGGCATCCTCTTGA 1272 0.4371 MDVKFARRNERIGGTTCVYWLAGRCNRNPCRFLHSGTPSLHTTYHNSNTAHRYGKRTHSSSENTPRYDKKSVLVRKSEDRDGTSVAKASKKPSPSSTVCKYWINNNCVHGEKCQNVHSWFCGDGFSILAKLQQHKKVITGIVLPVGSDKLYSGCTDGTVCIWDCHTGQCVRVINLGAEVTSLINEGPWIFVGLKNAVKAWNIQNITEFTLNGPKGRVLAMTVGNDTLFAGAEDGAIAAWRGSSEAKSPFELVASLTGHTKAVVCLTVGGGKRLYSGSMDHSIKAWDMDTLQCTMTLNEHTDVVTSLICWDQFLLSSSSDCTTKVWAAFEEGTLKVTYTHKEEDGVVSLFGMADAEGKPILCCSCRDSSVRLYELPSFLERGRLFGKKEVASIELGPGGLFFTGDGTGLLTVWKWLEQPNVASS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01242 423 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
Cca05g01242 423 SUPERFAMILY WD40 repeat-like 128 415 IPR036322 GO:0005515
Cca05g01242 423 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Cca05g01242 423 SMART WD40_4 124 163 IPR001680 GO:0005515
Cca05g01242 423 SMART WD40_4 248 286 IPR001680 GO:0005515
Cca05g01242 423 SMART WD40_4 332 373 IPR001680 GO:0005515
Cca05g01242 423 SMART WD40_4 376 413 IPR001680 GO:0005515
Cca05g01242 423 SMART WD40_4 203 240 IPR001680 GO:0005515
Cca05g01242 423 SMART WD40_4 289 326 IPR001680 GO:0005515
Cca05g01242 423 MobiDBLite consensus disorder prediction 55 86 - -
Cca05g01242 423 Pfam WD domain, G-beta repeat 250 286 IPR001680 GO:0005515
Cca05g01242 423 Pfam WD domain, G-beta repeat 128 163 IPR001680 GO:0005515
Cca05g01242 423 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Cca05g01242 423 Gene3D - 224 421 IPR015943 GO:0005515
Cca05g01242 423 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 6 422 - -
Cca05g01242 423 Gene3D - 117 211 IPR015943 GO:0005515
Cca05g01242 423 Gene3D - 14 116 - -
Cca05g01242 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 289 - -
Cca05g01242 423 PANTHER - 6 422 IPR044715 -
Cca05g01242 423 ProSiteProfiles Zinc finger C3H1-type profile. 93 120 IPR000571 GO:0046872
Cca05g01242 423 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Cca05g01242 423 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Cca05g01242 423 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Cca05g01242 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 172 IPR001680 GO:0005515
Cca05g01242 423 MobiDBLite consensus disorder prediction 44 96 - -
Cca05g01242 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 295 IPR001680 GO:0005515
Cca05g01242 423 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Cca05g01242 423 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Cca05g01242 423 SMART c3hfinal6 93 119 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01242 Cca-Chr5 30000718 30004169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01242 97 376 Eukaryotic Initiation Factors Gene Family AT2G46290 24.522 9.51e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01242 - - gmx:100787799 655.595