Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01238 ATGAAGTGGGAAACTATAACCCTCCCTCCTACACCTTGTactcccaactccaacatcaacaccaacaccaaTTGGTTGGTGGAAGATAGCAGGAGCACAAAATGGACCACTGAAGAGAACAAGCTCTTTGAAAATGCTCTTGCGGTGCATGATAAGGATACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCAGGAAAGTCTGTTGTGGATGTGATCAGGCAGTACAAGGAGTTAGAAGTGGATGTTTGCAATATAGAAGCTGGTTTGATCCCAGTTCCTGGCTATAGCACTGCCACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTAGTTATGATGGGTTTAAAGTAAGTGGAAAGAGATCTTCCTCAGTGAGACCTCATGAGCATGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTTTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATTACTAGAACCCCAACACAGGTTGCTAGTCATGCTCAGAAGTACTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATCCATGACATAACAACAGTGAATCTCACTGAAACCACCACAACTTCATCAGAAGACACAAATAGATCCACTTCACCACACGCGCTCTCACAGCAGCAGCCAAATCCTACTTCTACTACCCCCAGAACTCATTTTCAGTGGAGCAATGAGTCAAACACAGGAGTGGCTACGACACTTAGTCCTGCACATGAAAGAGTCTTCATGACTCCTTATGGTGCCAACTCCTTTGAGGTTAAAATGCAGGGACAGAATCTGCACAAGAGTGCTCTTTATGAGTCTTCTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTAG 936 0.4284 MKWETITLPPTPCTPNSNINTNTNWLVEDSRSTKWTTEENKLFENALAVHDKDTPDRWHKVAEMIPGKSVVDVIRQYKELEVDVCNIEAGLIPVPGYSTATSPFTLDWVNTPSYDGFKVSGKRSSSVRPHEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTTTSSEDTNRSTSPHALSQQQPNPTSTTPRTHFQWSNESNTGVATTLSPAHERVFMTPYGANSFEVKMQGQNLHKSALYESSYLGPQTQNMVFQMQQSSQH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01238 311 SUPERFAMILY Homeodomain-like 134 187 IPR009057 -
Cca05g01238 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Cca05g01238 311 Pfam Myb-like DNA-binding domain 34 78 IPR001005 -
Cca05g01238 311 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Cca05g01238 311 ProSiteProfiles SANT domain profile. 30 85 IPR017884 -
Cca05g01238 311 PANTHER MYB TRANSCRIPTION FACTOR MYB51 2 287 - -
Cca05g01238 311 Gene3D - 138 188 - -
Cca05g01238 311 MobiDBLite consensus disorder prediction 208 257 - -
Cca05g01238 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Cca05g01238 311 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Cca05g01238 311 MobiDBLite consensus disorder prediction 208 259 - -
Cca05g01238 311 CDD SANT 139 184 IPR001005 -
Cca05g01238 311 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Cca05g01238 311 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 287 IPR043363 -
Cca05g01238 311 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
Cca05g01238 311 CDD SANT 34 80 IPR001005 -
Cca05g01238 311 SUPERFAMILY Homeodomain-like 33 87 IPR009057 -
Cca05g01238 311 Gene3D - 27 94 - -
Cca05g01238 311 SMART sant 136 186 IPR001005 -
Cca05g01238 311 SMART sant 31 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01238 Cca-Chr5 29957638 29960043 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01238 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01238 - - gmx:778034 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01238 05 29957638 29960043 Cca05g01238 05 29957638 29960043 ECH
Cca05g01238 05 29957638 29960043 Cca05g01567 05 34834403 34836859 ECH
Cca05g01238 05 29957638 29960043 Cca01g01834 01 42742172 42744961 ECH
Cca05g01238 05 29957638 29960043 Cca01g00715 01 9365367 9368115 ECH
Cca07g01537 07 39782663 39785324 Cca05g01238 05 29957638 29960043 ECH
Cca01g01834 01 42742172 42744961 Cca05g01238 05 29957638 29960043 ECH