Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01228 ATGAAGAAAACACCATCCCCCAAATTGCATCAATCTAGCCAAAGAAAAAAACCGAATGCTAATCTTCAACTTGTTGGTGCAATCAATGACACAAGGAGGCACAATCCTAAGACTAATTCCGCACTGAAATCTTTGAAGCATGCTGTCAAGAAATGTGCAGCTGCTTTTTCATTGTTTCTCTCTGGCAAAAGAAAGACAGCCTCAAATGATGTTGGAAATGATGAGAGGAAGAATACATCCAAAGTCAAAGGGGTGGTATCATCATCAACAGATTTATCATCAGAAGGTAACACCAAGAATTCTTCAAAATGGAAGTTTTCTTATTCCTACGCATCATCTAGCACTGCAAGTGGACAGCTTGGAATCGGCAACTTCTCCTTTGAAGAGATTTACAAGTCAACAGCAAAATTCTCTCCAGATAATGAAATTGGGCAAGGTGGATTTGGAACCGTCTACAAGGGAAAGCTTAATGATGGAACTCTTGTTGCTGTGAAACGTGCCAAGAAGGATGTGATACGCAATCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCGCAAATTGAGCACCGGAATCTTGTGAGGTTGTATGGATATTTGGAGCATGGAGATGAGAAAATTATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACATCTAGATGGTATTCGAGGAGAAGGACTAGAAATTGGAGAGCGTTTAGACATAGCAATTGATGTAGCTCACGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAATCAGTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTGTCTGATGATCCTACTGCAACCCATATTTCAACTCAAGTTAAAGGGACAGCAGGATACATGGATCCTGAGTATCTTAGAACATATCAACTCACTGAAAAGAGTGATGTTTATTCTTTTGGTGTATTGCTTGTCGAAATGATGACAGGAAGACATCCAATAGAATCAAAGAGACCCCTTGATGAGAGAGTGACAATCAGATGGGCAATGAATATGCTCAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGACTTAGAAGAAATCCAGCCTCCATTAAAGCAGTAAAGAAGGTTCTCAAGCTAGCTCTTCAATGCGTTGCGCCTTTGAAACAATCAAGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGAAATCCGTAAAATTTTTAGGGATGAGGTGAATTCTGATCATCCTCCCCTTCTTTCTCACCATTCTGAAAATTTTCCTCAAAGAGAGAAGAATAAGCATATGACATTTGGTATTGAAGAAGATGACAACCATAAATTTGTGTCTGTACCTAACATTCATTCATAA 1395 0.3935 MKKTPSPKLHQSSQRKKPNANLQLVGAINDTRRHNPKTNSALKSLKHAVKKCAAAFSLFLSGKRKTASNDVGNDERKNTSKVKGVVSSSTDLSSEGNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYKGKLNDGTLVAVKRAKKDVIRNHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGDEKIIVVEYVGNGNLREHLDGIRGEGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILISENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIESKRPLDERVTIRWAMNMLKQGDAVFAMDPRLRRNPASIKAVKKVLKLALQCVAPLKQSRPPMKNCAEVLWEIRKIFRDEVNSDHPPLLSHHSENFPQREKNKHMTFGIEEDDNHKFVSVPNIHS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01228 464 Gene3D Transferase(Phosphotransferase) domain 1 214 425 - -
Cca05g01228 464 ProSiteProfiles Protein kinase domain profile. 137 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01228 464 SMART serkin_6 137 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01228 464 MobiDBLite consensus disorder prediction 66 101 - -
Cca05g01228 464 CDD STKc_IRAK 143 412 - -
Cca05g01228 464 Gene3D Phosphorylase Kinase; domain 1 97 213 - -
Cca05g01228 464 PANTHER OS01G0253100 PROTEIN 1 448 IPR045271 GO:0004714|GO:0006468
Cca05g01228 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Cca05g01228 464 SUPERFAMILY Protein kinase-like (PK-like) 118 412 IPR011009 -
Cca05g01228 464 MobiDBLite consensus disorder prediction 1 21 - -
Cca05g01228 464 Pfam Protein tyrosine and serine/threonine kinase 140 409 IPR001245 GO:0004672|GO:0006468
Cca05g01228 464 MobiDBLite consensus disorder prediction 82 101 - -
Cca05g01228 464 ProSitePatterns Protein kinases ATP-binding region signature. 143 169 IPR017441 GO:0005524
Cca05g01228 464 PANTHER OS02G0821400 PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01228 Cca-Chr5 29878032 29882581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01228 109 418 Receptor kinase-like Gene Family AT1G79620 44.795 1.53e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Cca05g01228 PK_Tyr_Ser-Thr 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01228 - - gmx:100811511 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01228 05 29878032 29882581 Cca05g01228 05 29878032 29882581 ECH
Cca05g01228 05 29878032 29882581 Cca09g00988 09 29647423 29651194 PCT