Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01226 ATGGGTTACTTGTGTGATTTTTGTGGAGACCAGAGGTCTTTGGTGTACTGCCGCTCTGATGCTGCGTGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTTTCTCGGCGTCATTCGAGAACCCTCTTATGCGAGAGATGTAATTCACAACCTGCATTTGTGAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCATGGTACCTCACCGTCTTCGGCACACAAGAGGCAAACAATCAATTGCTACAACGGCTGCCCTTCGGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCCATGGGTGAAGCATGTGAGCAGGAACTAGGTTTGATGAGCATTAATGAGAACAGTAATAAGAGTGCTTGGGTTCCTCCAGAAGGCCAGAATGTGTCTGGTTCAGCTCAAGTGGCTGATCTTCCCAGCAAGGATAAGTCTTGTGCTGGCACATCTTCAATGCCTGAGTTGAGCTCAGAACCCCGTATTCTGGATCAGCCGCCTGGACCAGCAAATGAATGTGTGCCCAAGTTGTACTGTCCTGGTAAGAAAGTTTCTGGAATATGTGAAGATGATGATCTATATGATGATTTTGCCATGGATGAAGTGGATCTAGAACTTGAGCACTATGAGGAACTTTTTGGTATGGCTCTCACTCACTCTGAAGAGCTTTTTGAAAACGGTGGAATTGATAGCTTATTTGAGACAAAGGACATGTCTGCTAGTGCTGGTGATTCCCATTGTCAGGGTGCTGTTGCTGCTGAGGGGTCATCTGCTGGATTGGTCAATGCTATGCAACCAGCCTGCAGCAATGCAGCATCCGCAGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCTCAATCAAACATTTCATTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAGTTCTCTGCAATCTGCTAACCGCAGCAATGCTGTCATGCGCTATAAGGAAAAGAAAAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCCGACGTCCGAAAGCGTGTGAAGGGCCGGTTTGTTAAAGCCGGTGAAGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTGCTGA 1236 0.4604 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGTSPSSAHKRQTINCYNGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENSNKSAWVPPEGQNVSGSAQVADLPSKDKSCAGTSSMPELSSEPRILDQPPGPANECVPKLYCPGKKVSGICEDDDLYDDFAMDEVDLELEHYEELFGMALTHSEELFENGGIDSLFETKDMSASAGDSHCQGAVAAEGSSAGLVNAMQPACSNAASADSMLSTKTEPIVCFTARQSQSNISFSGVTKDSAGDYQEDCGASSMLLMGEPPWCPPCPESSLQSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRKRVKGRFVKAGEVYDYDPLSQTRSC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01226 411 MobiDBLite consensus disorder prediction 138 171 - -
Cca05g01226 411 CDD Bbox1_BBX-like 4 47 - -
Cca05g01226 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Cca05g01226 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Cca05g01226 411 MobiDBLite consensus disorder prediction 138 181 - -
Cca05g01226 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Cca05g01226 411 CDD Bbox1_BBX-like 47 89 - -
Cca05g01226 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Cca05g01226 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca05g01226 411 SMART bboxneu5 48 89 IPR000315 GO:0008270
Cca05g01226 411 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Cca05g01226 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01226 Cca-Chr5 29859473 29866493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01226 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 54.608 2.94e-148 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca05g01226 CCT 7.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01226 - - gmx:100783016 754.977