Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01225 ATGGGCCTCTCAAGTCTCCCAGCACCATCTGAAGGAGTATTATGTGTCCTTCTGGTGAACACTGTATTGTCAATTTCCATATTTAAAGGCATTGTTAGGACAATCCTACACATTGTTGGCATCCACCTTTCATCATCCTCCACTTCACCAGATCCCTCACAAACCCCACCTGAGTCATTTGAATTCCATCTCAGTCCGTCTGAGAGTTACATTGAAGAGTTCAGAAGCCGGACACCAACACTACGGTTTGACAGCGTGTGTTGCTGTAAACACCCTGAACATGACTGCTCTGTGTGTCTCACCCGGTTCAAACCCGAATCGGAGATAAACCGCCTTTCCTGCGGCCATCTCTTCCACAAAGTGTGCTTGGAGCAGTGGCTGAACTACTGGAACGTTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGATGCATCTTGCTTTCAGTAA 456 0.4759 MGLSSLPAPSEGVLCVLLVNTVLSISIFKGIVRTILHIVGIHLSSSSTSPDPSQTPPESFEFHLSPSESYIEEFRSRTPTLRFDSVCCCKHPEHDCSVCLTRFKPESEINRLSCGHLFHKVCLEQWLNYWNVTCPLCRTPLMPEDDASCFQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01225 151 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Cca05g01225 151 SUPERFAMILY RING/U-box 91 143 - -
Cca05g01225 151 SMART ring_2 96 137 IPR001841 -
Cca05g01225 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 150 - -
Cca05g01225 151 Pfam Ring finger domain 95 138 IPR001841 -
Cca05g01225 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 147 IPR013083 -
Cca05g01225 151 PANTHER - 1 150 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01225 Cca-Chr5 29854736 29856722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01225 1 145 C3H Transcription Factor Family AT2G04240 62.987 7.00e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01225 K16285 - gmx:100786803 290.041