Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01222 atgggagagggagagaacacagaaatagaaatagaaactgaaacagaatcagaagcaTCATCAACATGGAACCTCGCCAAACACACTCACGTAATTCACCTCTCCGAGAAGCTCATCAATGGGAACCTCAACGCCAAGATTGAGGCTGCCAGGGAGATAAGGAGGATGGTTCGGAAATCCTCGTCGTCGTCCAAGACACGTTCCAAGCTCGCCGCAGCGGGTGTCATCGAACCGCTCGTGTTCATGCTCTCTTCTTCCAACGTCGACGCTCGCCAATCCTCTCTCCTCGCTCTCCTCAACCTCGCTGTTCGCAATGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGCAAAATAGCAGCAGCATACGAGAATTAGCTACAGCTGCAATCTTGACACTCTCAGCTGCTGCACCCAACAAGCCCATTATTGCTGCTTCTGGAGCAGCACCTCTCCTCGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGACGCTGTTACAGCCCTCCACAATCTTTCTTCTAGCATTGAGAATTCCATTGAACTTCTTGATGCAAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACGGCACTACTTGAAATCCTTTCCAACTCTGAAGAAGGACGAACCGCGATCACAGTCGCAGATGGTGGAATCTTAACACTAGTAGAGACAGTCGAGGATGGATCACTTGTCAGCACAGAACATGCTGTTGGAACTCTGCTGTCATTATGTCTAAGCTGCCGCGATAAATACCGGGAATTGATTCTTAAAGAAGGAGCAATTCCGGGTCTGTTACGTCTGACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCCCGTGTGCTTCTGGATTTGCTGAGAGATTCTCCCACAGAAAAAAGACTAACCTCCTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAAAGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACAGTTATTGCAAGATATGGTTCAAAGGAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA 1149 0.4517 MGEGENTEIEIETETESEASSTWNLAKHTHVIHLSEKLINGNLNAKIEAAREIRRMVRKSSSSSKTRSKLAAAGVIEPLVFMLSSSNVDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSSSIRELATAAILTLSAAAPNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSSSIENSIELLDASAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAITVADGGILTLVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPTEKRLTSSVLEKIVYDIAERVDGVDKAAETAKQLLQDMVQRSMEHSMKCIQHRAASCTPSVIPST 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01222 382 SMART arm_5 188 230 IPR000225 GO:0005515
Cca05g01222 382 SMART arm_5 63 103 IPR000225 GO:0005515
Cca05g01222 382 SMART arm_5 147 187 IPR000225 GO:0005515
Cca05g01222 382 SMART arm_5 231 272 IPR000225 GO:0005515
Cca05g01222 382 SMART arm_5 104 146 IPR000225 GO:0005515
Cca05g01222 382 PANTHER U BOX DOMAIN-CONTAINING 14 348 - -
Cca05g01222 382 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Cca05g01222 382 Pfam Armadillo/beta-catenin-like repeat 149 187 IPR000225 GO:0005515
Cca05g01222 382 MobiDBLite consensus disorder prediction 1 15 - -
Cca05g01222 382 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 348 - -
Cca05g01222 382 Gene3D - 18 171 IPR011989 -
Cca05g01222 382 SUPERFAMILY ARM repeat 36 340 IPR016024 -
Cca05g01222 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Cca05g01222 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Cca05g01222 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 243 IPR000225 GO:0005515
Cca05g01222 382 Gene3D - 177 322 IPR011989 -
Cca05g01222 382 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Cca05g01222 382 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01222 Cca-Chr5 29826796 29832290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01222 1 315 U-box Gene Family AT3G54790 36.810 5.86e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01222 K08332 - gmx:100782472 606.29