Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01216 ATGGGTGCCGTCGTCGAGTGCTACCCGTCGCCGCGTACGGCGGTGCTGTCCCTCAACACTTTGCCGTTAGGCTTCCGTTTCCGTCCCACCGACGAGGAGCTTATTGATTACTACCTCCGCTCCAAGATCAACGGGAATGGGGACGACGTTTGGGTTATACGTGAAGTTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATATGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCGAATGGACACAGGTTGAACCGAGCTACGAATAATGGGTATTGGAAGGCTACGGGGAAGGATCGAAGGATTAAGTCTGGCTCCATGTTGATTGGGATGAAGAAGACTCTGGTTTTCTATACTGGTCGTGCTCCCAAGGGGAAGAGGACCAATTGGGTTATGCACGAGTACAGGCCTACCCTGAAGGAGCTTGATGGAACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAACAAGATGAGAGTATTGAATGTTCAAACGGTGATGATGTGGAACGGAATACTTCAACTCCTACAACTGCCAATTACTCTCCAGACGAAATACCATCCGATTCAGCTCTGGTTCCAGCATCTTCCTCACAGGTTACTGAAGATGATAAGCCTCCAGCAGTTATCACTGAGAACTCTGAGGAAGCGATATCCAACATTATATCTCCGGGTGATTGCCATAGTGATGGATGTGATGCTCCCCGTGCACTAAAACACATTGTAGAACCAGCTGCTGAGGAGGATCTGCCATTTGATGTGAACATATTTTTTAACACAACTGAGCCATTGGATGACAAATTATTCTCTCCTGTCCATGCGCACTTCCCACAAGAAATTTATTATCAAACTAACAATCAACCCGAACTTCAGTATGGTACAAATGAGACAAATTTTTCAAACATTTTTGAATCGATTAATTGGGATGCGTTCTCCTATGATACTAGCAGTCTAGATGTGAGCTCATCCTTGCTTAACATTAAGGACAATGGATCAGGCAGTGACTCAGATGTCGAAATGGCCAATATAACGCATCTGCAAGGGTTTGATTATCCTAAGGCGGCAGTTGAGCCAAACAGCAATGTAGGATTGTTTCAGAACAATAACCAGATGGCTTTCTCAAATGATGATAGTATGGGCCAAGTGCACAATGTGGTCAACAATTATGAGCAACCAAGAAACTTTGATACATTTGTTAATGGTGATACTGGAATCAGAATAAGGGCTCGTCAAGGACGAAATGAGCCAAACATGAACAAGGTGGCACAATTGCAAGGTATCGCACCTAGGAGAATACGATTGGGTGTCGTTAGGCGCCCACCTGGTTCCCTGACGAAAGATGAGAATTGTGCTTGTGCCCCAGAAGACCAGAATTCAAAATCCATCATTTCTGGGGAGAGGAAGGCTTCTGAAAACCTTGCAGCTGATGAGAGTTCCACCGTTACTAATGATGTGGATGAACCAGAGAAAGCATCAGCTGAGTCAGCTGACATAAGAAAGACAAATCAGCAACATTTTGCAACTGTAAAATCCATCTCGGGAGTGAAAAACAGCCGCTACACATCAAAGGTTTCCTTTAACCGTGCCATGTGGTCTTATGTTCTTGCAGTTTCCGCCATTGTACTGGTCTCAGTAATACTCCTTGTTCAGATATGGGGATATGTCAGATCTTAA 1719 0.4508 MGAVVECYPSPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREVDVCKWEPWDLPDMSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNNGYWKATGKDRRIKSGSMLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESIECSNGDDVERNTSTPTTANYSPDEIPSDSALVPASSSQVTEDDKPPAVITENSEEAISNIISPGDCHSDGCDAPRALKHIVEPAAEEDLPFDVNIFFNTTEPLDDKLFSPVHAHFPQEIYYQTNNQPELQYGTNETNFSNIFESINWDAFSYDTSSLDVSSSLLNIKDNGSGSDSDVEMANITHLQGFDYPKAAVEPNSNVGLFQNNNQMAFSNDDSMGQVHNVVNNYEQPRNFDTFVNGDTGIRIRARQGRNEPNMNKVAQLQGIAPRRIRLGVVRRPPGSLTKDENCACAPEDQNSKSIISGERKASENLAADESSTVTNDVDEPEKASAESADIRKTNQQHFATVKSISGVKNSRYTSKVSFNRAMWSYVLAVSAIVLVSVILLVQIWGYVRS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01216 572 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Cca05g01216 572 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 435 - -
Cca05g01216 572 SUPERFAMILY NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Cca05g01216 572 MobiDBLite consensus disorder prediction 485 514 - -
Cca05g01216 572 MobiDBLite consensus disorder prediction 182 219 - -
Cca05g01216 572 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 16 435 - -
Cca05g01216 572 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Cca05g01216 572 Gene3D NAC domain 30 176 IPR036093 GO:0003677|GO:0006355
Cca05g01216 572 MobiDBLite consensus disorder prediction 177 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01216 Cca-Chr5 29748652 29753385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01216 14 449 NAC Transcription Factor Family AT4G35580 41.739 2.75e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca05g01216 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01216 - - gmx:100778903 886.33