Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01215 ATGAAAGTAATGAGCTTTTCTGGTAGCATAACAAAACCTAGTTTTTTGATTGGCCAAACGAAAATGCCTATTCTAACATTTGGTCATTGTAAGTTGAGTGCTACCCTAGCTCTTAGGAGGATGGGGTTGATTACGAAGCTCCAATATTCTGTTGCTGATAGGACATTTACTTCTGGTTCCATGGATTCGCCGGCGTCCACGACGGACGCCGGTCGGATGAATCGGAGGCGGGGTGGCTCCTCATCGCTATATAGCCGTCCTAGTTTATCTGAAATGAAGAAGGAGAAGGCGGCAATGAGGGAAAAAGTTTATGAGTTCTTGAGGGCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCACACTTTGGGGCTTACAATTGAAGACATCAATAACTATCCACTTGTTCTTGGCTGCAGTGTCAAGAAGAACATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTGAGGAAATCCACGATTACGCAGTTCTTGCAGAGATACCCACAAGTGCTCCATTCGAGTGTGGTTGTGGATCTTATGCCGGTGGTCAATTATCTCAAGGGGATGGATATCAAACCTGATGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGTTAGGATTTAAACTTGAGGGAACCATGAGCACATCGGTTGCATATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATCGGAGGTGTCTTAACTAGATACCCGGAGATTTTGGGGATGCGAGTTGGTAGGATCATCAAGCCTTTTGTGGAATATCTGGAAAGCTTGGGAATTCCAAGGTTAGCCATTGCTAGACTGATCGAGCAAAGACCTTATATTCTTGGATTTGGGCTGAATGAGAAGGTGAAGCCAAATGTTAAATCTCTTGAAGAGTTTAATGTTAGGCAAACATCACTTCCATCTATAATTGCTCAGTACCCTGACATCATTGGAACTGACTTAAATACAAAGCTTTTCAATCAGAGAAGTTTACTCAATTCTGTACTTGAATTGGATCCTGAGGAATTTGGCCGAGTTGTTGAGAAGATGCCACAGGTAGTTAGCCTCAGCAGTGGACCGATGCGGAAGCATGTTGATTTTCTTAAGGATTGTGGGTTTTCCTTGCTGCAAATGAGGAAGATGATTGTTGGATGCCCTCAGTTACTTGCTTTAAACATTGACATCATGAGACTTAGCTTTGATTACTTCCAAATGGATATGAAAAGGCCTTTGGAGGACTTGGTTACTTTCCCTGCATTCTTCACTTATGGTTTGGAGTCAACCATAAAACCTAGGCATAAGATGGTTGTCAAGAAAGGGTTGAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATTGAAGAGATGGAAATGGAACCATCATTTGACATGAATTCACTGACGCAACCAAGGAGTGATGAATCAGATTTTGATTACGAAGACAGTGATGAAGATAACGAGTAG 1554 0.4202 MKVMSFSGSITKPSFLIGQTKMPILTFGHCKLSATLALRRMGLITKLQYSVADRTFTSGSMDSPASTTDAGRMNRRRGGSSSLYSRPSLSEMKKEKAAMREKVYEFLRAIGIVPDELDGLELPVTVDVMRERIDFLHTLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTITQFLQRYPQVLHSSVVVDLMPVVNYLKGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGVLTRYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEQRPYILGFGLNEKVKPNVKSLEEFNVRQTSLPSIIAQYPDIIGTDLNTKLFNQRSLLNSVLELDPEEFGRVVEKMPQVVSLSSGPMRKHVDFLKDCGFSLLQMRKMIVGCPQLLALNIDIMRLSFDYFQMDMKRPLEDLVTFPAFFTYGLESTIKPRHKMVVKKGLKCSLSWMLNCSNEKFEQRMDYDTIDIEEMEMEPSFDMNSLTQPRSDESDFDYEDSDEDNE 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01215 517 Pfam mTERF 165 473 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 80 113 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 360 390 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 287 318 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 179 210 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 395 426 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 MobiDBLite consensus disorder prediction 58 89 - -
Cca05g01215 517 Gene3D Transcription termination factor 3, mitochondrial 265 480 IPR038538 -
Cca05g01215 517 Gene3D Transcription termination factor 3, mitochondrial 82 194 IPR038538 -
Cca05g01215 517 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 64 506 - -
Cca05g01215 517 MobiDBLite consensus disorder prediction 492 517 - -
Cca05g01215 517 PANTHER CGI-12 PROTEIN-RELATED 64 506 IPR003690 GO:0003690|GO:0006355
Cca05g01215 517 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01215 Cca-Chr5 29736420 29739858 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca05g01215 mTERF 2.3e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01215 K15032 - gmx:100785223 879.011