Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01213 ATGAGAACTATGAAGGAATGGTTCACAACTTCAAAGGCTGTGTTGAGCATGCTGCTGGTGCAGGTTATTGGAACCGGGATGCAGCTCTTATCAAGGGTTATACTGGTTGAAGGCTCTTCCATTTGTGCACTTATTGCATATCGTCATGTTGTTGCTGCTATTTGTGTTGCCCCTTTTGCACTCTACTTCGAAAGAGACCGCACGAAGAAGTTCAGTTGCAGGGTTTTGTTTTGGCTCTTCATTAACGCGTTAATGGGGATGGCCCTGGCTCAAGGATTGTTCTATTATGGTCTGCGAGACACTTCAGCTACTTACTCTGCAAATTTTCTCAACTTAATTCCTATATTCACCTTCTTTACCTCTATCATTTGCAGAATGGAGAATCTGGTGCTGCAAACAAGGGCTGGTAAAGCTAAGTGTGTAGGGGCAATTTTGTGTGTTGGTGGTGCATTAGTTACTGGTCTTTACAAAGGGAAGCAATTTAGTATTGATCATCATAGTCATCACCTTCAAATTGCAGCACACAGAACCCATATGCTTCGTGGCTCTTTCTTTTTGATTGGTAGCTGCTTCTCATACACTGCTTGGTTTATTGCACAAGTGATGTTGCTGAAAGTATTTCCATTGAGGTACTGGGGAACAATGCTGACATGCATTGTGGCAGCAATTCAAGCAGCAATAATGGGTGTCTTCATAGATTCAAATAAAGCTTCTTGGAGATTAAACTGGAATCTACAACTCATCACAATATTGTATTCGGGAGCACTGAATACTGCTGCTTCATTTTGCTTACTATCTTGGGCAATCATGGCCAAAGGACCTACTTATCCTCCAATTTTCAATCCACTTTGTCTTATTTTTGTGGCCTTATCTGAAGCTATCGTACTTGGACAACCATTAGGAGTTGGAATGTTGGTGGGAATGGTTTTGATCATAACGGGATTGTACTTCTTTCTGTGGGGCAAAAAGAATGACACACAGCACTTGCCTCAACCAATTGTTGCAGCTGTAGAAGGATCAACAGTTATGGCTGATGGGCCTCAATCAACATGTACAGTCATACAAAGTTCTTCACCTATCAACGCTGTGGTTCTTGAAATTGAAAAGACAGAAAAAAACTAA 1122 0.4144 MRTMKEWFTTSKAVLSMLLVQVIGTGMQLLSRVILVEGSSICALIAYRHVVAAICVAPFALYFERDRTKKFSCRVLFWLFINALMGMALAQGLFYYGLRDTSATYSANFLNLIPIFTFFTSIICRMENLVLQTRAGKAKCVGAILCVGGALVTGLYKGKQFSIDHHSHHLQIAAHRTHMLRGSFFLIGSCFSYTAWFIAQVMLLKVFPLRYWGTMLTCIVAAIQAAIMGVFIDSNKASWRLNWNLQLITILYSGALNTAASFCLLSWAIMAKGPTYPPIFNPLCLIFVALSEAIVLGQPLGVGMLVGMVLIITGLYFFLWGKKNDTQHLPQPIVAAVEGSTVMADGPQSTCTVIQSSSPINAVVLEIEKTEKN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01213 373 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020|GO:0016021
Cca05g01213 373 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cca05g01213 373 PANTHER WAT1-RELATED PROTEIN 11 334 IPR030184 GO:0016021|GO:0022857
Cca05g01213 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 323 - -
Cca05g01213 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 157 - -
Cca05g01213 373 PANTHER WAT1-RELATED PROTEIN 11 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01213 Cca-Chr5 29700652 29714695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01213 15 323 Nodulin-like Gene Family AT1G09380 33.019 3.86e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01213 - - gmx:100782551 540.036