Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01212 ATGGTAAAAATGAGTGGAACGCATAGAGAAATGGAGAAGATTAGGAGAACTTTGAAACAATGGCTCTCATCATCGAAAGTTCTATGGAGCATGATATTAGTGCAAGTTTTTATTAGTGGGATGCAGCTATTATCAAAGGCCATACTAGTTAAAGGCTCTTTCATCTTTGCTATCGTTTCATATCGCCATATTGTTGCTGCCATTTGTATTCTCCCCTTTGCAATCTACTTTGAAAGAGGACGCAAAATGGACTTCAGTCTGAAGGTTTGGTTCTGGCTCTTCGTTAACGCATTGATGGGGATGACTCTAGCTCAAGGATTCTATTATTATGGTCTACGAGACACTTCAGCTACTTATTCCGCCAATTTCCTCAACTTAATTCCTGTATTCACCTTCTTTACCTCTATCATATCCAGAATGGAGAAATTGAGTTTGCACACTTGGACTGGTAGAACCAAGTTAGGAGGGGCAATATTGTGTGTTATGGGAGCATTAACTTCCAGTATTTACAAAGGGAAAGAATTTTATATTGGTCATCACCATAGTCATCATGTTCATGAGGCTGCTGGGGCACATGAAACTCACAAGCTTAGGGGCACTATATTTTTGCTTTGCGGTTGCCTCTCATACACAACTTGGTTTCTTGCACAAGTCAGATTGATGAAAGTATTTCCATTGAGGTACTGGGGAACAATGTTATCATGCATTTTGGCAGCAATTCAAGCAGCAATAATAGGCGTTTGCATAGATTCCAGTAAAGCTTCTTGGAAATTAGAATGGAATCTACAACTGGTCACTATAGTGTACTCAGGAGCATTGACTACTGCTGCCGCGTTCTGCATAATATCTTGGGCAATTACAATCAAAGGACCTAGTTACCCTCCAATGTTCAATCCTCTGGCTCTTATTTTTGTGGCATTTTCAGAAGCTATCCTACTTGGAGAACCATTAAGCGTTGGAACGATGCTGGGTGTGGTTTTTATCATTGTTGGATTATACTCCTTTTTGTGGGGCAAAAGTAAAGAGACAATGCTAATAACTCAACAACCAAATGTAGCAGATACAGAAGAATCAGACATCATTGATTTAATCCCTGCGGGGCAATCACCAGCTGCAGTAGTCCCATCTTTTTCTCATACAAATTCCAAAACTAGAGTTTTTGACATTGAAAAGTCTGTAGAAACTGAAAGTGTACTAGTTTAA 1203 0.3948 MVKMSGTHREMEKIRRTLKQWLSSSKVLWSMILVQVFISGMQLLSKAILVKGSFIFAIVSYRHIVAAICILPFAIYFERGRKMDFSLKVWFWLFVNALMGMTLAQGFYYYGLRDTSATYSANFLNLIPVFTFFTSIISRMEKLSLHTWTGRTKLGGAILCVMGALTSSIYKGKEFYIGHHHSHHVHEAAGAHETHKLRGTIFLLCGCLSYTTWFLAQVRLMKVFPLRYWGTMLSCILAAIQAAIIGVCIDSSKASWKLEWNLQLVTIVYSGALTTAAAFCIISWAITIKGPSYPPMFNPLALIFVAFSEAILLGEPLSVGTMLGVVFIIVGLYSFLWGKSKETMLITQQPNVADTEESDIIDLIPAGQSPAAVVPSFSHTNSKTRVFDIEKSVETESVLV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01212 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 61 152 - -
Cca05g01212 400 Pfam EamA-like transporter family 29 150 IPR000620 GO:0016020|GO:0016021
Cca05g01212 400 Pfam EamA-like transporter family 198 335 IPR000620 GO:0016020|GO:0016021
Cca05g01212 400 PANTHER WAT1-RELATED PROTEIN 25 355 IPR030184 GO:0016021|GO:0022857
Cca05g01212 400 PANTHER WAT1-RELATED PROTEIN 25 355 - -
Cca05g01212 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 260 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01212 Cca-Chr5 29685795 29694227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01212 30 369 Nodulin-like Gene Family AT1G09380 30.986 7.08e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01212 - - gmx:100808825 530.791