Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01211 ATGATTGGAATTTTCTTTGTTCCTTTGCATTCAATGGCTTCCTTGTGCAAAATCTTGCTCATATGTTGTTTGTTGAATCTTCTGGCCTCGATTTGGCCACACCCAGTTCCAGTTCATTCAGCTAGTGATGTTCCAATCAACGTGACAAAGCACTTCTACTTCCCTAACTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATGTGAAGCTCCTAGGCAGTGCCAGGTTCTCAAATGAAAAGGGTGCTCTTCAAATCCCAAATGAATCACATGACATAGACATAAGACACCAAGCAGGAAGAGGGATCTACTCCTTCCCAATTCGCCTGCTAGATCCAAGCACCAAGACCCCAGCTTCCTTTCACACCACTTTCTCTTTTCAGATGAACAATTCCACTGCCTCTGAGCAAGGTGAGTATGGAGGAAGTGGCCTCACTTTCATCGTTGTCCCTGATGAGTTCACAGTGGGAAGGCCAGGACCATGGCTTGGCATGCTCAATGATGCTTGTGAGAATGACTACAAGGCAGTGGCAGTGGAGTTTGACACAAGAAAGAACATAGAGTTTGGAGATCCAAATGACAACCATATTGGCATCAACTTAGGCACCATAGTATCCACCAAAGTTGTCAATGTTTCTGATGTTGGAGTGTCCCTTAAGGATGGTTCTGTTCACCGTGTTTGGATCACCTATGATGGTCCTCAAAGAAGAATGGACATTCGCCTTGGAAAGGGAAACCAAGAGGATTATCCACCCAAGCCTATCTTCTCAGAATCCTTGGATCTCTCTCCTTATCTAAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACAGGTAACCACACACAAATCCATAACATACTCTCTTGGAGCTTCACTTCCACAAGCCAAGCTTTTCTTCGGTTCCCTTCAGATGAAACCTGCCAAGGTAAGATCTTACTCGAGAATAGTACAAGTACTACACCACCAACTCCCAGTAAGTCTTCTAAGAATGAACTACCAAGAAGCTTTATGATTTTTGTGGCTGCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGCTTTTACTTCATCAGTAGGCACAGGAGAAACGCTTCCAAGTTGAACACTTCAGTGGAGACAGAGATTCACATGCCAAGGCCTCCAAACAAGCCTCGCCGCTTCACTTTTTCTCAACTTGCTTCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGAAGTGACTCTAGAGGCGAGTACTACAGAGGGAAGCTTTCCAATGGCAGCCAGGTGGCTGTGAAGAGATTCTCAGCTCAGTTTCTCAGCACACATGGATCAGACAAGAGGCGTTTGTTGAAGGAAATCAAAGGCATTAGCCATCTTCGCCACCCGAATTTGCTTCCCGTCAGAGGCTGGTGTCAAGACAACAATGAAATCATGGTGGTCTATGACTTTGTCCCCAATGGAAGCCTTGACAAATGGCTATTTGGGGCTGGTGTTCTTCCGTGGACTCGACGGTTCAAGGTTATTAAAGATGTTGCCGATGGCTTGAGCTTCCTCCACACTAAGCAACTAGCTCACAAGAACTTGAAATGCAGCAGTGTGTTCCTAGATGTCAACTTCAGAGCTGTTTTGGGTGATTTTGGGTTTGTGCTGTTGGGCGCAGAATCAAAACAGTTTGAGTCTGCAGTGTGCCATGGTGCAGATGTGTTTGAATTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGAATGAGGGAGGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTATTGGATTATGCTTGGAACTTGCATCAAATTGATGAGAAAGTGAAGCTGGTGGACAGAAGAATGGGGTCATTGATCAACTTGGATCAGGCAATTCGTGTTCTTGAAATTGGATTACTTTGCACTCTAAATGAGAACAAAGGAAGGCCCTCAATGGAGGAAGTGGTGGAGTTTCTTCTCAACATGGATAAGCCTATTCCTGAGTTGCCAAGAACTCGCCCTGTTGCCTTGTTCCCCTATAATAGTGCCAACACAGGACTTTGCAATGCTTATTCTTGCACTTTTTAA 2061 0.4527 MIGIFFVPLHSMASLCKILLICCLLNLLASIWPHPVPVHSASDVPINVTKHFYFPNFSFSNNPRLVHDVKLLGSARFSNEKGALQIPNESHDIDIRHQAGRGIYSFPIRLLDPSTKTPASFHTTFSFQMNNSTASEQGEYGGSGLTFIVVPDEFTVGRPGPWLGMLNDACENDYKAVAVEFDTRKNIEFGDPNDNHIGINLGTIVSTKVVNVSDVGVSLKDGSVHRVWITYDGPQRRMDIRLGKGNQEDYPPKPIFSESLDLSPYLNEYMFVGFSASTGNHTQIHNILSWSFTSTSQAFLRFPSDETCQGKILLENSTSTTPPTPSKSSKNELPRSFMIFVAAVALALALFLGFYFISRHRRNASKLNTSVETEIHMPRPPNKPRRFTFSQLASSTRSFSEIELLGSDSRGEYYRGKLSNGSQVAVKRFSAQFLSTHGSDKRRLLKEIKGISHLRHPNLLPVRGWCQDNNEIMVVYDFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHTKQLAHKNLKCSSVFLDVNFRAVLGDFGFVLLGAESKQFESAVCHGADVFEFGVLVLEVIAGRMREEKEEGNPEERNLLDYAWNLHQIDEKVKLVDRRMGSLINLDQAIRVLEIGLLCTLNENKGRPSMEEVVEFLLNMDKPIPELPRTRPVALFPYNSANTGLCNAYSCTF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01211 686 Pfam Protein tyrosine and serine/threonine kinase 403 544 IPR001245 GO:0004672|GO:0006468
Cca05g01211 686 Gene3D - 49 302 - -
Cca05g01211 686 Pfam Legume lectin domain 51 297 IPR001220 GO:0030246
Cca05g01211 686 ProSiteProfiles Protein kinase domain profile. 399 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01211 686 Gene3D Phosphorylase Kinase; domain 1 359 478 - -
Cca05g01211 686 CDD lectin_legume_LecRK_Arcelin_ConA 56 295 IPR001220 GO:0030246
Cca05g01211 686 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2-LIKE 39 668 - -
Cca05g01211 686 PANTHER - 39 668 - -
Cca05g01211 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 51 296 IPR013320 -
Cca05g01211 686 Gene3D Transferase(Phosphotransferase) domain 1 479 657 - -
Cca05g01211 686 SUPERFAMILY Protein kinase-like (PK-like) 375 650 IPR011009 -
Cca05g01211 686 ProSitePatterns Legume lectins beta-chain signature. 177 183 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01211 Cca-Chr5 29663834 29666462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01211 56 669 Receptor kinase-like Gene Family AT5G55830 31.944 3.98e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g01211 Lectin_legB 9.5e-58 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01211 - - gmx:100781464 1201.81