Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01192 ATGGGGCGGAgacctgcaaggtgttataggcaaattaagaacaagccataccccaagtcacgtttctgccgtggtgttcctgatcccaagatcagaatttatgatgttggaatgaagaagaaaggtgttgatgagttccctttctgcgtccatctggtcagttgggagaaggaaaatgtttcaagtgaggcactggaagctgcTAGGATTGCTTGCAACAAGTACATGGCCAAGTTTGCCGGAAAGGATGCTTTCCACTTGAGAGTGAGGGTGCACCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGCGCTGGAGCTGATAGGCTCCAGACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCCAGGGTGGCTATTGGGCAGGTCCTCCTTTCAGTCCGTTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTCCGCCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAATGGGGCTTCACCAAGTTTAGCCGTTCTGATTACCTCAAGTTCAAGTCAGAGAACAGAATTTTGCCTGATGGCGTGAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCCAACCGCCAACCTGGAAGAGCCTTTTTGAACACTGCTACTGCTTAG 666 0.3634 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLKFKSENRILPDGVNAKLLGCHGPLANRQPGRAFLNTATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01192 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Cca05g01192 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca05g01192 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01192 Cca-Chr5 29487830 29489592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01192 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.909 6.38e-144 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01192 K02866 - gmx:100305619 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01192 05 29487830 29489592 Cca03g00045 03 705853 708425 PCT