Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01191 ATGAAGTTCCAATTCCAAGCTGTTCCATTTGTTCTACTAAGCGTCATAGTGTCTCTCTTTGGCCTCATTGTAGCTGACTTGAACTCTGACAGACAAGCTCTCCTTGAGTTCTTTTCCAACGTACCACATTCCCCAAGGTTAAACTGGAGTGAGTCTACCCCAATTTGCTCTTCATGGGCTGGTGTGACTTGCAACCAAAATGGAACTAGTGTCATTGGCATCCATCTTCCAGGGGCAGGATTCAAGGGCTCCATTCCAAATAACAGCCTAGGAAAACTAGATTCCCTTAAAATCCTGAGCCTTCACACCAATGGCCTTAGAGGAAACCTTCCTTCTGATATCCTCTCCATTCCTTCACTCCAATATGTCAACCTGCAGCAGAATAACTTCTCAGGCCTAATACCTTCCTCTATCTCCCCTAAACTCGTAGCATTGGATATTTCCTTTAACAACTTCTCAGGAGTTATCCCTGACTTCAACCTTCCAAGTCTAAAGTATTTGAATTTGAGCTATAACAACTTGAATGGCTCAATTCCACATTCCATCAAGAATTTTTCATATACTTCTTTTGTTGGAAACTCTCATTTGTGTGGACCACCTCTCAGTAATTGTTCTGAAGTCCTCCctccatctccttctccttctcattctccctctccttctcctGTTTATCAACCACTCTCTCCTACAACTCCCCAAAATGGAAGAGCTACCACTTCAAAGAGTTACTTTGGCCTAGCTTCTATACTTGCTCTAGCAATTGGGGGCTGTGCCTTCCTCTCTCTCATAGTTTTGGTGATCTATGTATGCTGTTTGAAGAGGAACAAGACTCAAAGCAGTGGCATACTGAAAGGAAAGGCACCTTGTGCTAGAAAGGCTGAGGTTTCAAAGAGTTTTGGGAGTGGAGTGCAAGAGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGTTGCTCTTATAGCTTTGACCTTGAAGATTTGTTAAAGGCTTCAGCTGAAGTTCTTGGAAAGGGGAGCTATGGAACTACATATAGGGCTGCTTTGGAGGATGGAACAACAGTGGTGGTTAAAAGGATAAGGGACGTTCTGGTTGGAAAGAGGGAGTTTGAGCAACAGATGGAGGTTGTAGGAAGAATTGGTAGGCACCCTAATGTCATACCCCTTCGAGCTTCTTACTATTCCAAAGATGAGAAACTTCTAGTCTATGACTACATGCCAGGAGGCAGCTTGTTTTCCATGTTGCATGGAAACAGAGGCATGGGAAGAGCCTCATTAGACTGGGATTCAAGAATGAAGATTGCACTTGGAGCTGCAAAGGGAATTGCTTCCATTCACAATGATCACATGGGCTCAAAACTCACTCATGGCAACATTAAGTCCTCCAATGTGCTCATAACTGAAGAACATGATGGCTGCATCACTGATGTTGGACTTACTCCTCTGATGAGCACACAATCAACCATGTCAAGAGCCAATGGCTACCGTGCTCCGGAAGTAACCGAGTTCCGGAAAATCACTCAGAAGTCTGACGTTTACAGCTTTGGGGTGCTCCTACTTGAACTTCTCACTGGCAAGACTCCACTAGGATATCCTGTCTATGAGGACATGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTAGAGAAGAATGGACAGCTGAAGTTTTTGATGAGGAACTGCTTAGAGGGCCATATTTTGAAGAGGAAATGGTGCAGATGCTGCAGATTGCACTGGCATGTGTGGCAAAGGTGGCAGATAATAGACCAACAATGGATGAAGCAGTTAGGAACATAGAGGAAATTAGGCTTCCTGAATTGAAGAACCGTAACACATCATCTGAGTCTGAATCTAATGTACAAACCCCATGA 1866 0.4293 MKFQFQAVPFVLLSVIVSLFGLIVADLNSDRQALLEFFSNVPHSPRLNWSESTPICSSWAGVTCNQNGTSVIGIHLPGAGFKGSIPNNSLGKLDSLKILSLHTNGLRGNLPSDILSIPSLQYVNLQQNNFSGLIPSSISPKLVALDISFNNFSGVIPDFNLPSLKYLNLSYNNLNGSIPHSIKNFSYTSFVGNSHLCGPPLSNCSEVLPPSPSPSHSPSPSPVYQPLSPTTPQNGRATTSKSYFGLASILALAIGGCAFLSLIVLVIYVCCLKRNKTQSSGILKGKAPCARKAEVSKSFGSGVQEAEKNKLFFFEGCSYSFDLEDLLKASAEVLGKGSYGTTYRAALEDGTTVVVKRIRDVLVGKREFEQQMEVVGRIGRHPNVIPLRASYYSKDEKLLVYDYMPGGSLFSMLHGNRGMGRASLDWDSRMKIALGAAKGIASIHNDHMGSKLTHGNIKSSNVLITEEHDGCITDVGLTPLMSTQSTMSRANGYRAPEVTEFRKITQKSDVYSFGVLLLELLTGKTPLGYPVYEDMVDLPRWVRSVVREEWTAEVFDEELLRGPYFEEEMVQMLQIALACVAKVADNRPTMDEAVRNIEEIRLPELKNRNTSSESESNVQTP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01191 621 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cca05g01191 621 Gene3D Transferase(Phosphotransferase) domain 1 404 619 - -
Cca05g01191 621 Pfam Protein kinase domain 332 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01191 621 PANTHER LRR RECEPTOR-LIKE KINASE 5 621 - -
Cca05g01191 621 MobiDBLite consensus disorder prediction 208 227 - -
Cca05g01191 621 SUPERFAMILY L domain-like 40 200 - -
Cca05g01191 621 MobiDBLite consensus disorder prediction 208 236 - -
Cca05g01191 621 Gene3D Phosphorylase Kinase; domain 1 293 403 - -
Cca05g01191 621 Pfam Leucine Rich repeat 161 176 IPR001611 GO:0005515
Cca05g01191 621 PANTHER OS05G0588300 PROTEIN 5 621 - -
Cca05g01191 621 SUPERFAMILY Protein kinase-like (PK-like) 332 597 IPR011009 -
Cca05g01191 621 ProSitePatterns Protein kinases ATP-binding region signature. 334 365 IPR017441 GO:0005524
Cca05g01191 621 Gene3D Ribonuclease Inhibitor 27 206 IPR032675 -
Cca05g01191 621 ProSiteProfiles Protein kinase domain profile. 328 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01191 Cca-Chr5 29479463 29484028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01191 12 619 Receptor kinase-like Gene Family AT5G58300 55.102 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01191 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01191 - - gmx:100775340 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01191 05 29479463 29484028 Cca03g00047 03 716709 721730 PCT