Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01190 ATGGCCACCAACCAAGGTGTGCTCTCAACACTTGACAAAGCCAAGACACAAAAGTACCATTACAAGGCAATTGTGATAGCAGGGATGGGGTTCTTCACTGACGCATATGATCTCTTTTGCATCACTGCAGTTACCAAGCTTATAGGTCGCTTGTACTACTACGATCCCAATACTCACAATCCAGGAAAGCTTCCAAAGCCTGTAAACAATGCAATAACAGGAGTGGCATTGTGTGGTACCCTTGCAGGACAACTCTTCTTTGGCTGGCTTGGTGATAAACTCGGTAGAAAAAAGGTTTATGGGATAACACTTGTCACCATGGTAGGATGTGCCTTGGCATCAGGGCTTTCTTTTGGCTCCACAGCCAAGAGTGTGGTGGCTAGTCTTTGCTTCTTCAGGTTCTGGCTTGGATTTGGTATTGGAGGAGACTACCCTCTCTCAGCTGTTATAATGTCTGAATATGCTAATCAGAAGACAAGGGGTGCTTTTGTTGCTGCTGTCTTTGCCATGCAAGGTGTAGGAATATTGGTTGCTGGAGGTGTGGCCATGTTGGTCTCTAATCTATTCTTAGCAGCTTATCCAGCTCCAATTTTTGCAAATGATGCTGTGCAATCTACTCAGCCAGAAGGAGATTTTGTTTGGAGAATAGTACTCATGTTTGGTGCATTTCCTGCAGCCTTAACTTATTATTGGCGAATGAAAATGCCGGAAACTGCAAGGTACACTGCTTTAGTGGAAGGAGACCACGATAAAGCTGTTGAAGATATGGCCAAAGTTCTTGATAAGGATATACCTTTAGGAGAATCAAATACCAGGGTTGCTGCCACACCTAGCCTCTCTTATGGATTGTTCTCATCGGAGTTTTTTGAAAAACATGGCCTTCACCTTCTAGGAACAACCAGCACTTGGTTCTTTTTGGATATTGCCTTTTACAGTCTTCAACTAACACAAAAAGATATTTATCCTGCTAGTGGACTTGTCTTCAAAGCTTCCCAAATGAATGCCATAGAGGAGGTGTTTAGACTCTCCAAAGCAATGTCTGTGGTGGCCCTGCTTGCCACAGTCCCTGGATATTGGTTCACAGTGTACTTCATTGACAAGATTGGAAGGTATTATATCCAACTTGTTGGATTTTTTGTAATGTCTGTTTGCATGTGGTTTCTGGGGCACAAGTATGGAGAATATAGGGGAGAGGAATGCAACCCTGGTGCAAAATATGAATATTGTAATGGAAAACACACAACGTTTGTCATTCTTTTTGGACTCACCCTCTTCTTTGCCAACTTTGGACCCAATAGCACAACATTTATAGTGCCAGCTGAGCTGTTCCCTGCTAGATTCCGTTCAACGTGTCATGGGATATCAGCAGCAGCCGGGAAAGCAGGAGCTATCATTGGTGCTTTTGTGGTGCAAGGCTATACAGATAGTGCAGAAAACAGAACAAAAGGAATGAAGAATGCACTTATGACACTTTCCGTGGTCAACATGCTTGGATTCTTGTTCACTTTCTTAGTGCCAGAAACACGAGGCCGATCACTTGAAGAAATCTCAGGAGAGGATAAAGAACACTCTGGCAATATTACTGAAGAGAAGGCATATGAAACAACAAATGATGCTAAAGATGGAACAAGAAACGTCAATGCTGATCAACCTTCAGAAATCTCAATGGTTTAG 1674 0.4301 MATNQGVLSTLDKAKTQKYHYKAIVIAGMGFFTDAYDLFCITAVTKLIGRLYYYDPNTHNPGKLPKPVNNAITGVALCGTLAGQLFFGWLGDKLGRKKVYGITLVTMVGCALASGLSFGSTAKSVVASLCFFRFWLGFGIGGDYPLSAVIMSEYANQKTRGAFVAAVFAMQGVGILVAGGVAMLVSNLFLAAYPAPIFANDAVQSTQPEGDFVWRIVLMFGAFPAALTYYWRMKMPETARYTALVEGDHDKAVEDMAKVLDKDIPLGESNTRVAATPSLSYGLFSSEFFEKHGLHLLGTTSTWFFLDIAFYSLQLTQKDIYPASGLVFKASQMNAIEEVFRLSKAMSVVALLATVPGYWFTVYFIDKIGRYYIQLVGFFVMSVCMWFLGHKYGEYRGEECNPGAKYEYCNGKHTTFVILFGLTLFFANFGPNSTTFIVPAELFPARFRSTCHGISAAAGKAGAIIGAFVVQGYTDSAENRTKGMKNALMTLSVVNMLGFLFTFLVPETRGRSLEEISGEDKEHSGNITEEKAYETTNDAKDGTRNVNADQPSEISMV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01190 557 Pfam Sugar (and other) transporter 24 517 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca05g01190 557 PANTHER PHOSPHATE TRANSPORTER 6 532 - -
Cca05g01190 557 MobiDBLite consensus disorder prediction 515 538 - -
Cca05g01190 557 MobiDBLite consensus disorder prediction 539 557 - -
Cca05g01190 557 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 532 - -
Cca05g01190 557 Gene3D MFS general substrate transporter like domains 19 534 IPR036259 -
Cca05g01190 557 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 510 IPR020846 GO:0022857
Cca05g01190 557 SUPERFAMILY MFS general substrate transporter 11 518 IPR036259 -
Cca05g01190 557 MobiDBLite consensus disorder prediction 515 557 - -
Cca05g01190 557 CDD MFS_PhT 24 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01190 Cca-Chr5 29474998 29476671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01190 1 519 Inorganic Solute Cotransporters AT5G43350 62.524 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01190 K08176 - gmx:100820250 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01190 05 29474998 29476671 Cca05g01190 05 29474998 29476671 ECH