Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01189 ATGAATTTGGGAAGTGTTGTTACATCCACTGTTTCCTGTAAAGCGGGAAGCAACAACAATTTCCTTTTCTGGATTTTGGTTTGCTTCTTGCTAACAAATTTTCTGGGAGCTCCTGAAGTATATGCACATTTCCAAGTAATAAAGCTCATTGTGGGGTTTCCATCTTCTTCCGTTTGGGGTGTGATCTTTTGGCAAGATTGCGTGGATGTTGAATTTTCTGATTTGTTTGGTCCATCTCCCGTTGAAGCCTCAATAGCAGTAAGCTCTGAGAATCATGAAAATTTGGTAGCTACCCGGGGTTTGAGCGAAAAGATTTACAATGATCATGCTTCCATTCACATCCGGTCTCAATCTTTATTGGCTCCCACAACCTGTGTTGGTCAGTCCTTGCAGATTAGCAAACTCGCCTTACATAAGGCAGAAGATGCATCGGATCTTGTGGAGGAGGTCTTAATAGAAACACATGAAGAACTTAAGGAACATTCTGTTAACAATTCTGAAGTTGAGAAAAATAATACACGTTTCAATAATTACTGTCTGAATAATCAGACTATTGGAGTTGAGGATTTTGAGGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTATCAAGTGAGGAGGGCAGGTACATCTGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATCATGCAGGGAAACCATGCTGAATATGTAAAATCTGAAAGGGATATGTTGACAAAGGTGGACAACCCATTTATTGTGCGGCTCAGATATGCATTCCAAACAAAATATAGGCTGTACCTTGTGCTTGATTTTGTCAATGGTGGCCACCTTTTCTTTCAGCTTTATCACCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATGCTGCAGAGATTATTTGTGCTGTTTCTTATCTTCATGCAAATGATATAATGCACAGGGATCTTAAGCCTGAAAATGTTCTGCTCGATGCAGATGGTCATGTAAGATATCATGCACTCATATCTGTGTCTGTGACTCTGGCTCTCTGCATTAGGCATGCCACATGCCTAAGTATTTATTGTGAAGGGATGAGTGATTTGTATCTAACTTCTATTTTGCTGTATTATGATATAATCCTGTGCTTGAGATACCAGGTAGTGTTAGCAGATTTTGGCCTGGCTAAGCAATTCAACGAGAGTGAAAGGTCAAATTCTATGTGTGGAACTGTAGAGTACATGGCCCCTGAAATTGTTATGGGAAAAGGTCATGATAAGGCAGCTGATTGGTGGAGTGTGGGAATTTTACTATATGAAATGCTTACAGGAAAGCCTCCTTTCTCCGGTGGAAATAGACATAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCTTTTTTGTCAAATGAGGCACATTCACTGTTAAAAGGGCTGTTGCAGAAAGACGTCAGCAAACGCCTTGGCAGTGGATCAAGAGGCAGTGGGGAGATTAAAAGCCACAAGTGGTTTAAGTCACTCAATTGGAAGAAACTGGAGGCCCGTGAAATTAGGCCAAGCTTTGTCCCAGTTGTTGCTGGGAAGCTTTGTGTTGCTAACTTCGAGGAGCGGTGGACTAGTATGCCCTTGCTGGATTCTCCAGCCGCTAGTCCCAGAAAGGATGACAATGCCTTCAAGAAGTTCTCATATACTGGTTCTCCAGTTGTGTCATGA 1692 0.4173 MNLGSVVTSTVSCKAGSNNNFLFWILVCFLLTNFLGAPEVYAHFQVIKLIVGFPSSSVWGVIFWQDCVDVEFSDLFGPSPVEASIAVSSENHENLVATRGLSEKIYNDHASIHIRSQSLLAPTTCVGQSLQISKLALHKAEDASDLVEEVLIETHEELKEHSVNNSEVEKNNTRFNNYCLNNQTIGVEDFEVLKVVGQGAFGKVYQVRRAGTSEIYAMKVMRKDKIMQGNHAEYVKSERDMLTKVDNPFIVRLRYAFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARFYAAEIICAVSYLHANDIMHRDLKPENVLLDADGHVRYHALISVSVTLALCIRHATCLSIYCEGMSDLYLTSILLYYDIILCLRYQVVLADFGLAKQFNESERSNSMCGTVEYMAPEIVMGKGHDKAADWWSVGILLYEMLTGKPPFSGGNRHKIQQKIIKDKIKLPAFLSNEAHSLLKGLLQKDVSKRLGSGSRGSGEIKSHKWFKSLNWKKLEAREIRPSFVPVVAGKLCVANFEERWTSMPLLDSPAASPRKDDNAFKKFSYTGSPVVS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01189 563 Pfam Protein kinase domain 190 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01189 563 Pfam Protein kinase domain 371 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01189 563 ProSiteProfiles AGC-kinase C-terminal domain profile. 498 563 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca05g01189 563 Gene3D Transferase(Phosphotransferase) domain 1 282 517 - -
Cca05g01189 563 SUPERFAMILY Protein kinase-like (PK-like) 187 545 IPR011009 -
Cca05g01189 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cca05g01189 563 CDD STKc_AGC 196 497 IPR045270 GO:0004674|GO:0005524
Cca05g01189 563 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524
Cca05g01189 563 PANTHER RIBOSOMAL PROTEIN S6 KINASE 65 327 - -
Cca05g01189 563 PANTHER RIBOSOMAL PROTEIN S6 KINASE 370 558 - -
Cca05g01189 563 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 65 327 - -
Cca05g01189 563 MobiDBLite consensus disorder prediction 538 563 - -
Cca05g01189 563 ProSiteProfiles Protein kinase domain profile. 190 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01189 563 SMART pkinase_C_6 498 558 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca05g01189 563 SMART serkin_6 190 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01189 563 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 370 558 - -
Cca05g01189 563 Gene3D Phosphorylase Kinase; domain 1 128 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01189 Cca-Chr5 29470478 29474892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01189 54 560 AGC Kinase Gene Family AT3G08720 56.078 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Cca05g01189 Pkinase 4.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01189 K04688 - gmx:100803509 730.709