Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01185 ATGAGAGTGGAAGCAAGACCTATGGATTCGTATTATCTATTTATCTCCCAACTTGTTGCAACTTTTGCAGGCTCGCTGACTCGCACGTGCGACTCACTCACCTGCTGCATGctctctctctctctctctcgcttccccaattcatgctctcttcactctctTCAGGCCAGTGAATTGGATAAACAAAATGCTGTAGAAGGACGGGAAGAAGAAAAAGGTGATTCTTGTGGCATTGATAAGCCTTATTTTGTTGAGGTTGACCGGACGGGTTGGTTGTTGAGTGAACACCTAGATATTTCTGAAGTTGTTTTGGGGGACTTAAATTTGAGAGAAGAATTTTCCGGTTTTGAACTGTCTGAGGATTTTTATAGGGATCCCCAGCACTCGTTAAGATTTCGGGTGTGTAATGTCAATAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCCGTGTTACCCTGTACTGATATTCATCTAGAGTTTGTAACAAGAGATACTGTTGAGCAGATGGAAACATACACAGTGTTGTTTTCTGGTATTTTTGATGGGCCTGATGAAGGTGTTACTGGTCTTCTTCACTTAGCAAGTTTGAAGTTTGTTACGCTGAGGCCAGTTCTTGGGGTTAGGCTTTCTGATGAAATTTCCTCCATCAGGGTAAGGGTTGAGGTACTAAAGAGTGCCTTTGATGCATGCGAGTCACTTCTTGAGAATTCTAGACAACTATGGAAAAAGAGTATGATGAATGTAATGTCTTGGCTACGTCCAGAAATAATGACTTCGGAAGTTAGGTATGGGTTTGGTAGCCATATGGAAATAGAAGTTGATCCACAGACAGAGATGGCAGATGAGACTTACCATGCCAAGAAACATTCAAGGTTTGATCCTGCAGGTTTCTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATGCCAGAGTTACTTCCAAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAACGGGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCCCCATTGTCTATACCTGTGGATTTTCTAGACACAAGTTCTCAAATGTTTTTCAATCCTTTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATATTTGCTCACCGTAGATCAGCATCTGGAAGTAATATATTTATTGATTTAGAGCCCCAAATTAATGGTGATCAAAAAGTCACTTTGAAAAGACTTAAGAGAGAACGTGTTGAGTGCATCTGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGACTGTGTTGGCTATTCACTTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATAGCTGTGAGGGATGGAGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCTGCTCCTATTTTGCCCCAGTGGCATGATGAAATTTTACGTCATACCCATCAGGACTCCTTGAAAACTTGTGTTTATGAAGGTGTGCGAGACACATCTCTTTCCAATACGTCTCTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATTTGACCCATGATTCTGATAGGCATGAAGGTGACCGACATGTTCTGAGATTTCAGAAAAGATACCCAGTTATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAGAGTAATGCTACTGCTGCCACTGGAATGGCTCTAAGACTCCATTCAAAGTATCGTTGGTGCATTACTGGGACCCCAATTCAGCGAAAGCTTGATGACTTGTATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTCGATACATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGCAGGAGCAATGGAATTTACCCACAAAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCTCAAGATGAGTGCCTCTCTTGGCTTACACTTTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTAATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTTTGAACGGTTCCTCTGATCCTTTGATCACTCACACTGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCATGCAGCAGACACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCACTTGCAGCTATTGCTGCCATACAAAAAGATTTTTCTCAAGCTACATTACTGTATAGTGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGTCTGGATCCGTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACTGGCTTCGAACTTTTCTTCAGTATTGCCATCCAAAGGAAAGCAGTTCTCTGGGTTTTCTGAATTTAAGACAACCAAAAGGCATCTAATTATAAAGGTCGATCATTGTCTTGTGAAGAGGCAAAAATTGAGTGGTTGTGATGACGTAAATGTGACAGTGCCATCTGCAGAACCATCAAATATTGCATCTAGCCTTTCAGAAGATGACTTAAATGAGGATCAGGAATTTGATAATTTATCAGCTGATTCTGTCAAATCTCTAATAGCAGAATGTGAAGATTCAAAGCAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCTCAACTGGAGTTTCAAAATTCTTACACGCAGGTCTGTAATGCACATCGTGAGAGCAAAACAGATCAAAATACATTTTGGTGGCTAGAAGCACTCCATTATGCTGAGCAGAACAAAGATTTCTCTACCGAGTTGATTAGAAAGATAGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTGCTCGTTTCCGGAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCACTTAGAGGCATCTAGAAAAACACTCCTAGATCGACTGTTAGATATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGAGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGCGTTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCGAGACTCTTTGTTCTTAAGAATGAACGCGGAGGAATCATTTCATCTGCTGAGGAGGCGGTAGATTTTCAGAAGAAAACATTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCACAGCTCTACAGTATCTGATATTAGTCATGAAGAATCGAAGAAAAGGAATGTTGGACAGAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTTATTCTTGGAGTTATAAGGAACTGCTGCAAGGGTCGATTAGGAAGGGACAGTGTCTCAGCTGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCTCGTTTGCACCTACGGGCAAGTGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAACGAATTATCTGCAGCTAGCTCAAACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAGTCTAAGCAAAAACTGCAATTCGAAAGTCCAAATGGTTCTTCATTCACACGAGAGACAACTGCAATGTCAAACTCTACAGAAGAGAAGGGTGCACTTGTATCTAAAACTGATGACGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCAGTCAGAAAATGGTTTTTCAATGTGGGCATCTAACATGCTGTAAATGTTTATTTGCAATGACCGAGCAAAGACTTCAAAATAGCAAGCTTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACCGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAATGAATCTTCCAATTCTTCAGTGCTGCATACAATTGGCAGCAGTGAAAAATGTGAAGCATCCATTAGTGTTAAAGGCTCATATGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAACGATCATAGAGCAAAAGTTCTTGTATTTTCCAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTGCTGCCAATAACATTACCTACATCCGGATGAAGGGAGGAAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGGCTCAAGAGGATGTGAGGGGTCAACAGCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCAGAGCATGTGGTCCTTGTAGAGCCTTTACTCAATCCAGCTGCTGAAGCCCAAGCAATCAGTCGTGTACATCGGATTGGACAAAAGAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTATATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGTAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACGATGCCAGAAAGTGATGAAAATACCAACACAAATGCAAATCTAAGACACTTGCCACCATCAGTGGCCGCTGCTATAGCTGCTGAGAGGAGACTTAATGAACAAAGTACATGA 5115 0.4051 MRVEARPMDSYYLFISQLVATFAGSLTRTCDSLTCCMLSLSLSRFPNSCSLHSLQASELDKQNAVEGREEEKGDSCGIDKPYFVEVDRTGWLLSEHLDISEVVLGDLNLREEFSGFELSEDFYRDPQHSLRFRVCNVNNVLGRIKLGHWPVLPCTDIHLEFVTRDTVEQMETYTVLFSGIFDGPDEGVTGLLHLASLKFVTLRPVLGVRLSDEISSIRVRVEVLKSAFDACESLLENSRQLWKKSMMNVMSWLRPEIMTSEVRYGFGSHMEIEVDPQTEMADETYHAKKHSRFDPAGFYEAIKPSKAEPMLEDDMPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLSIPVDFLDTSSQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASGSNIFIDLEPQINGDQKVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSLKGKSLKSKQGCESKTYKTTIAVRDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEILRHTHQDSLKTCVYEGVRDTSLSNTSLMDISDLASADIVLTTYDVLKEDLTHDSDRHEGDRHVLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAATGMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDTYRWWTDVIRDPYEKGDAGAMEFTHKIFKQIMWRSSKEHVADELDLPSQDECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPDSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSMQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYSEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPLASNFSSVLPSKGKQFSGFSEFKTTKRHLIIKVDHCLVKRQKLSGCDDVNVTVPSAEPSNIASSLSEDDLNEDQEFDNLSADSVKSLIAECEDSKQKYLSVFSSKLSAAQLEFQNSYTQVCNAHRESKTDQNTFWWLEALHYAEQNKDFSTELIRKIEEAISGTSNNSKSSRIAARFRSISSLKYQIQTGLDHLEASRKTLLDRLLDIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKTFALNHFLSKLSQSNHSSTVSDISHEESKKRNVGQRVVVSRSASELELILGVIRNCCKGRLGRDSVSAATKHLHIFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRASEDDKSLDALGENELSAASSNFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFESPNGSSFTRETTAMSNSTEEKGALVSKTDDETCPICQEKLGSQKMVFQCGHLTCCKCLFAMTEQRLQNSKLHNWVMCPTCRQHTDFGNIAYAVDAQNESSNSSVLHTIGSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFRGKQNGSRGCEGSTAKSIQVLLLLIQHGANGLNLLEAEHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENTNTNANLRHLPPSVAAAIAAERRLNEQST 1704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01185 1704 Pfam Zinc finger, C3HC4 type (RING finger) 1391 1438 IPR018957 GO:0046872
Cca05g01185 1704 MobiDBLite consensus disorder prediction 1359 1380 - -
Cca05g01185 1704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 720 IPR027417 -
Cca05g01185 1704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 513 IPR013083 -
Cca05g01185 1704 SMART helicmild6 1516 1608 IPR001650 -
Cca05g01185 1704 SMART ultradead3 318 691 IPR014001 -
Cca05g01185 1704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 1670 IPR027417 -
Cca05g01185 1704 CDD DEXQc_SHPRH 322 721 - -
Cca05g01185 1704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1488 1659 IPR001650 -
Cca05g01185 1704 CDD PHD_TCF19_like 449 514 - -
Cca05g01185 1704 Pfam SNF2-related domain 325 817 IPR000330 GO:0005524|GO:0140658
Cca05g01185 1704 Gene3D - 1444 1696 IPR027417 -
Cca05g01185 1704 ProSiteProfiles Zinc finger RING-type profile. 1391 1439 IPR001841 -
Cca05g01185 1704 MobiDBLite consensus disorder prediction 1359 1381 - -
Cca05g01185 1704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1363 1443 IPR013083 -
Cca05g01185 1704 Pfam Helicase conserved C-terminal domain 1486 1608 IPR001650 -
Cca05g01185 1704 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 60 1686 - -
Cca05g01185 1704 SUPERFAMILY RING/U-box 1386 1443 - -
Cca05g01185 1704 Gene3D - 385 429 IPR038718 -
Cca05g01185 1704 Gene3D - 514 741 IPR038718 -
Cca05g01185 1704 SMART ring_2 1391 1438 IPR001841 -
Cca05g01185 1704 SUPERFAMILY FYVE/PHD zinc finger 444 516 IPR011011 -
Cca05g01185 1704 ProSitePatterns Zinc finger PHD-type signature. 448 514 IPR019786 -
Cca05g01185 1704 SMART PHD_3 447 515 IPR001965 -
Cca05g01185 1704 CDD SF2_C_SNF 1482 1619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01185 Cca-Chr5 29400518 29415726 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01185 526 815 RAD5 or RAD16-like Gene Family AT5G43530 31.724 8.96e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca05g01185 SNF2_N 5.7e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01185 K15710 - gmx:100776659 2955.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01185 05 29400518 29415726 Cca05g01185 05 29400518 29415726 ECH