Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01180 ATGAAAAACATGGTTTGTCCCGAAACTGAAAGTGAAAGTGTCTCACTCAAGAGGAAAAAAGTGATGATAATGAAAGAGCTTGTTAAGGGCCAAGAAGCCGCTACTCAACTCATGCTTCTTCTCGAGAACCCCTCTTGGAGTGACACTGATCGGGACTCTCTCTCATCTCAGGAACTCATGGCCAATGTCCTCACATCTTTCACACAAGCTCTTTCTATCATAACTGCTTCTGCAGATGACGTTATTCCTCCGCTGAATCTCCACAGTTCCGGCGATGATCAGTGCAGTGGGAGTGGGAAGAGATCCCAAAAGGGTGGAAGAGGTCGCTATCATAGAAGGAGGAGTGCATTGACATGGACCGTACTCTCGAGCACCACTGAAGACAATCATGCATGGAGGAAGTATGGGCAAAAGGGAATTCTGAATTCTGAATTTCCTAGGAGTTACTTGAGGTGCAGTCACAAGTATGATCAAGGTTGTAAAGCAACCAAACAGGTGCAGCGGTGTGAAGAGAATCCTGATATGTACCAAACTACATACATTGGCATGCACACATGCAATGCCAAACCCCCCAAGGCTACACATTCGACCACAAATTCTACTACTTGGGAATCATATCTTCTGAATTCTGATCGTGACTCCAAGGTACCAAATGTACATGATCACCACTCACCAAGCTTAACTATAAAACGAGAATTTCCCAAAGAAAACACATCAAGTGATGTTACAGATCACAATTTGGATCCTAGCCTGTGGTCAGAATTGAAGGATTTTGAATCATCGATCCAACCCTACCATTAA 801 0.4407 MKNMVCPETESESVSLKRKKVMIMKELVKGQEAATQLMLLLENPSWSDTDRDSLSSQELMANVLTSFTQALSIITASADDVIPPLNLHSSGDDQCSGSGKRSQKGGRGRYHRRRSALTWTVLSSTTEDNHAWRKYGQKGILNSEFPRSYLRCSHKYDQGCKATKQVQRCEENPDMYQTTYIGMHTCNAKPPKATHSTTNSTTWESYLLNSDRDSKVPNVHDHHSPSLTIKREFPKENTSSDVTDHNLDPSLWSELKDFESSIQPYH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01180 266 MobiDBLite consensus disorder prediction 87 111 - -
Cca05g01180 266 MobiDBLite consensus disorder prediction 214 248 - -
Cca05g01180 266 Gene3D WRKY domain 113 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01180 266 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 5 260 - -
Cca05g01180 266 ProSiteProfiles WRKY domain profile. 121 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01180 266 Pfam WRKY DNA -binding domain 127 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01180 266 SMART WRKY_cls 126 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01180 266 SUPERFAMILY WRKY DNA-binding domain 122 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01180 266 MobiDBLite consensus disorder prediction 214 242 - -
Cca05g01180 266 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 5 260 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01180 Cca-Chr5 29372764 29377627 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01180 17 228 WRKY Transcription Factor Family AT3G56400 38.261 4.13e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01180 WRKY 3.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01180 - - ccaj:109795309 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01180 05 29372764 29377627 Cca03g00054 03 797468 799850 PCT