Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01178 ATGTCTACTTACAATAGCCCTATTGCATCAGAACCTTCTGTATCACAACCAAATGCTGCATTAAAGTCTGAGCAATCAACACCTGCTCTTACTCTTCCCATTCATCACCATCCAAACTTGTTTCCAACTTGTCAGCCCAAATCTCATTCTGGTTATGCTAGAAGTGGCATTAAAGTTTACAAGAAGGGGATACCAATTGCTAGGTCAGTGAACCTTGCACAATTACGTGGTTACGATGATTTGATTCATAAATTGGATCAGTTATTTGAATTTGGAGGTCAATTGATTTCTTCACAAAAGAATTGGTTTATTGCCTACACTGATTATGAAGAAGATATAATACTTGTTGGTGATGATCCATGGGAGGAATTTGTTGTAATGGCCCGTAAAATTTATATCTACACCAAAGACGACGACATTCAGGAAATGAGGTATGATGAAAGATCAATTAAAAAAATGCAAAAGCAGGAGAATGAAAAGTTTTACAAGCAATTCCATGGTCACATACACAGGAATGATGAAAGATTGCATGAAGGATCAGATAATGAAATGCAGAATCAGAAGAATGACACTTTATGTAAGCAATTTCGAGGAAAACAGCAGATAAGTGATTCAGGATGCTCGTGGTCGTTATTAACTCTAAGTTCTGACAGAGAAACCGATATAACATTGTCAAATTCCCACGATTATTCCGGTCCCTCAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAGAATGGCTCAAGAGGATGTGAGGGGTCAACAGCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCAGAGCATGTGGTCCTTGTAGAGCCTTTACTCAATCCAGCTGCTGAAGCCCAAGCAATCAGTCGTGTACATCGGATTGGACAAAAGAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTATATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGTAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACGATGCCAGAAAGTGATGAAAATACCAACACAAATGCAAATCTAAGACACTTGCCACCATCAGTGGCCGCTGCTATAGCTGCTGAGAGGAGACTTAATGAACAAAGTACATGA 1209 0.3912 MSTYNSPIASEPSVSQPNAALKSEQSTPALTLPIHHHPNLFPTCQPKSHSGYARSGIKVYKKGIPIARSVNLAQLRGYDDLIHKLDQLFEFGGQLISSQKNWFIAYTDYEEDIILVGDDPWEEFVVMARKIYIYTKDDDIQEMRYDERSIKKMQKQENEKFYKQFHGHIHRNDERLHEGSDNEMQNQKNDTLCKQFRGKQQISDSGCSWSLLTLSSDRETDITLSNSHDYSGPSKAHVAISQFRGKQNGSRGCEGSTAKSIQVLLLLIQHGANGLNLLEAEHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENTNTNANLRHLPPSVAAAIAAERRLNEQST 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01178 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 369 IPR027417 -
Cca05g01178 402 ProSiteProfiles PB1 domain profile. 54 136 IPR000270 GO:0005515
Cca05g01178 402 SUPERFAMILY CAD & PB1 domains 57 131 - -
Cca05g01178 402 Pfam AUX/IAA family 95 138 IPR033389 -
Cca05g01178 402 Gene3D - 50 143 - -
Cca05g01178 402 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g01178 402 CDD SF2_C_SNF 259 317 - -
Cca05g01178 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 233 384 - -
Cca05g01178 402 Gene3D - 233 396 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01178 Cca-Chr5 29344096 29353858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01178 53 138 B3 DNA Binding Superfamily AT5G62000 53.488 1.13e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca05g01178 AUX_IAA 2.9e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01178 K15710 - ccaj:109795197 413.305