Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01177 ATGTCTACTTACAGTAGCCCTATTGCATCAGGACCTTCAGTATCACAACCAAACGCTGCATTAAAGTCTGAGCAATCAACACCTGCTCTTACTCTTCCCATTCATCACCATCCAAACTTGTTTCCAACTTCTCAGCCCAAATCTCAAACTGGTTATGCTAGAAGTGGCATTAAAGTTTTCAAGAAGGGGATGCCAATTGCTAGGTCAGTGAACCTTACACAATTACGTGGTTACGATGAATTGATTCATAAATTGGATCAGTTATTTGAATTTGGAGGTCAATTGATTTCTTCACAAAAGAATTGGCTTCTTGCCTACACTGATTATGAAGAAGATATAATGCTTGTTGGTGATGATCCATGGGAGTATGATGAAAGATCAATTAAAGAAATTCATAAGCAGGAGAATGAAAACTTTTACAAGGAATTCCATGGTCACATACACAAGAATGATGAAAGATTGCCTGAAGGATCAGATAATGAAATGCAGAATCAGAAGAATGACACTTTATGTAAGCAATTTCGAGGAAAACAGAAGATAATTGATTCTGAAAGCTCATGGCCCTTATTAACTTCAAGTACTGACAGAAACACTAATACAACATTGTCAAATTCACACGATTATTCCGGTCCCTCGTAA 639 0.3709 MSTYSSPIASGPSVSQPNAALKSEQSTPALTLPIHHHPNLFPTSQPKSQTGYARSGIKVFKKGMPIARSVNLTQLRGYDELIHKLDQLFEFGGQLISSQKNWLLAYTDYEEDIMLVGDDPWEYDERSIKEIHKQENENFYKEFHGHIHKNDERLPEGSDNEMQNQKNDTLCKQFRGKQKIIDSESSWPLLTSSTDRNTNTTLSNSHDYSGPS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01177 212 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 153 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g01177 212 SUPERFAMILY CAD & PB1 domains 56 131 - -
Cca05g01177 212 Gene3D - 50 141 - -
Cca05g01177 212 PANTHER AUXIN RESPONSE FACTOR 2 34 153 - -
Cca05g01177 212 MobiDBLite consensus disorder prediction 186 212 - -
Cca05g01177 212 ProSiteProfiles PB1 domain profile. 54 136 IPR000270 GO:0005515
Cca05g01177 212 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01177 Cca-Chr5 29335917 29337549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01177 47 159 B3 DNA Binding Superfamily AT5G62000 40.517 9.93e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01177 - - ccaj:109795197 427.557