Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01176 ATGTTCTTAGAAAGTGAAAGTATGATCATAGTAAAGGAGAGAGTGATAATGGAAGAGCTTGTGAAGGGCCAGGAAGCTGCTACCCAACTCAAGGGTCTTTTAGAAAACCCCATTGGGAGTGAAGACTTTCTCTCACCAGAGCAACTCTTGGAGAATGTGCTCTCATCTTTTTCACAAACTATTTCTATCATTAAAGCCTCTTCTTTCCAACCACCTCctcctgttcctgctcctgctcctgctcctgcACCTCACGTTCTCGGTTCCGCCAGTTATTCAACTTCTGGAGATGACAGTGTAAATTGGAACAGATCCCAACAGGGTCAAAGCGATGAAAGAGATAGTCACAGTATAAGGAAGGGGAAGGGTGCGCAGACATGGACCGCAGTCTTAAAGACCACTGACGACGGTCATGTATGGAGGAAGTATGGAGAAAAGCAAATTCTGAATTCTAAATTTCTTCGGAGTTACTTTAGATGCACTTACAAGTTTGATCAAGGTTGTAAAGCAACCAAACAGGTGCAGCGATGTGAAGAAAATCCTGATATGTACCAAATAACATACATTGGCTTGCACACATGCAATGCGTCTCTCCTCAATAGGAATGATGAAAGTTTGCATGAAGGATCAGATCTCGAAATGCAGAATCGGGAGAATGATAGCTTATATAGTCAATTTCGAGGAAAACAGAAGATAATTGATTATGAAAGCTCATGGTCCTTATTAACTTTAAGTTCTGACAGAAACACTGATACAACATTGTCAAATTCACACGATTATTCCGGCCCCTCGTGA 795 0.395 MFLESESMIIVKERVIMEELVKGQEAATQLKGLLENPIGSEDFLSPEQLLENVLSSFSQTISIIKASSFQPPPPVPAPAPAPAPHVLGSASYSTSGDDSVNWNRSQQGQSDERDSHSIRKGKGAQTWTAVLKTTDDGHVWRKYGEKQILNSKFLRSYFRCTYKFDQGCKATKQVQRCEENPDMYQITYIGLHTCNASLLNRNDESLHEGSDLEMQNRENDSLYSQFRGKQKIIDYESSWSLLTLSSDRNTDTTLSNSHDYSGPS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01176 264 Pfam WRKY DNA -binding domain 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01176 264 MobiDBLite consensus disorder prediction 69 83 - -
Cca05g01176 264 Gene3D WRKY domain 121 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01176 264 MobiDBLite consensus disorder prediction 69 122 - -
Cca05g01176 264 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 203 IPR044810 GO:0003700
Cca05g01176 264 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 11 203 - -
Cca05g01176 264 SMART WRKY_cls 134 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01176 264 MobiDBLite consensus disorder prediction 88 108 - -
Cca05g01176 264 SUPERFAMILY WRKY DNA-binding domain 131 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01176 264 ProSiteProfiles WRKY domain profile. 129 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01176 Cca-Chr5 29307930 29319062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01176 11 197 WRKY Transcription Factor Family AT3G56400 39.791 1.52e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01176 WRKY 2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01176 - - ccaj:109795541 517.309