Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01175 ATGGATATTCAGCAAATAATATTAGAAGCAGAGCATCGATGGCTACGTCCGGTTGAAATTTGTGAAATTTTCAGCAATCGTAACAAGTTTCTACTTGCTCCAGAACCTGCATATATGCCACCAAGTGGTTCACTTTTCCTGTTTGATCGGATGGTGGTGAGATTCTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGCAAGAACAGTCAGAGAAGTTCACGAGACACTAAAGGTAAATACACTGCATCTAAACTCAAAGTCTTGA 273 0.3993 MDIQQIILEAEHRWLRPVEICEIFSNRNKFLLAPEPAYMPPSGSLFLFDRMVVRFFRKDGHNWRKKKDARTVREVHETLKVNTLHLNSKS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01175 90 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 82 - -
Cca05g01175 90 SMART CG_1_2 6 89 IPR005559 GO:0003677
Cca05g01175 90 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 2 82 - -
Cca05g01175 90 ProSiteProfiles CG-1 DNA-binding domain profile. 3 90 IPR005559 GO:0003677
Cca05g01175 90 Pfam CG-1 domain 9 83 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01175 Cca-Chr5 29292105 29292564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01175 1 86 CAMTA Transcription Factor Family AT5G64220 65.116 1.76e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01175 K21596 - ccaj:109795181 171.785