Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01174 ATGGAAAATATGATCTCAAAAAAGGAGCGACTGATAATGGAAGAGCTTGTGAAGGGCCAGAATGCTGCTACCCAACTCAAGATTCTTTTAGAAAACCCCAACCCCCTTGGGGGTACATACTTGATCCCACTCTCACCAGAGGAACTCTTGGAGAATGTGCTCTCATCTTTCTCACAAGCTATTTCTATCATTAACGTCTTTTCTTTCCAACCACCTCctcctgctcctgctcctgctcctgcACCTCACGTTCTGGGTTCCGCCAGTTATTCAATGTCTGGAGATTGCAGTGTAAATTGGAACAGATCCCAACAGGGTCAAAGCGATGAAAGAGATAGCCACAGTATAGGGAAGGGGAAGGGTGCACCGACATCGACCACACTCTCCGTCACCACTGAAGACAGTCATCTATGGAAGCAATATGGACAAAAGCTATTTCCGAATTCTAAATTTTTTTGGAGGTACTTCAGATGCATTTACAAGTATGATCAAGGTTGTAAAGCAACCAAACTGGTGCAGGGGTGTGAAGAAAATCCTGATTTGTACCGAATTACATACGTTGGCACGCACACATGCAATGCCAATCTCCCCACTAGGAATGATGAAAGTTTGCATGAAGGATCAGATCACGAAATGCAGAATCGGGAGAATGATATAAGAACTAATCTCCATCGCAAGTTTGATAAATATCAAATAAATGAAAAAATGTTTTAA 714 0.4048 MENMISKKERLIMEELVKGQNAATQLKILLENPNPLGGTYLIPLSPEELLENVLSSFSQAISIINVFSFQPPPPAPAPAPAPHVLGSASYSMSGDCSVNWNRSQQGQSDERDSHSIGKGKGAPTSTTLSVTTEDSHLWKQYGQKLFPNSKFFWRYFRCIYKYDQGCKATKLVQGCEENPDLYRITYVGTHTCNANLPTRNDESLHEGSDHEMQNRENDIRTNLHRKFDKYQINEKMF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01174 237 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01174 237 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01174 237 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01174 237 Gene3D WRKY domain 121 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01174 237 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 6 196 IPR044810 GO:0003700
Cca05g01174 237 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01174 237 MobiDBLite consensus disorder prediction 101 129 - -
Cca05g01174 237 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 6 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01174 Cca-Chr5 29277260 29289314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01174 8 211 WRKY Transcription Factor Family AT3G56400 34.101 1.62e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01174 WRKY 1.4e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01174 - - ccaj:109795530 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01174 05 29277260 29289314 Cca05g01174 05 29277260 29289314 ECH