Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01173 ATGGAAGAGCTTGTGAAGGGCCAGGAAGCTGCTACCCAACTCAAGGGTCTTTTAGAAAACCCCATTGGGAGTGAAGACTCTCTCTCACTCTCACCAGAGGAACTCTTGGAGAATGTGCTCTCATCTTTCTCACAAGCTATTTCTATCATCAACGTCTCTTCTTTCCAACCACCACCTCCTCCTCCTGCACCTCACGTTCTCGGTTCCACCAGTTATTCAATGTCTGAAGATTGCAGTGTAAATTGGAACAGATCCGAACAGGGTCAAAGCGATGAAAGAGATAGCCACAGTATAAGTGTAAATTGGAACAGATCCCAACAGGATCGAAGAGGTAGCTACAAAAGGAAGGGGAAGGGTGCACCGACACGGACCGAATTCTCAAACACCACTGACGACGGTTATGTATGGAGGAAGTATGGAGAAAAGCCATTTCCGAATTCTAAATTTATTCGGAGTTACTTCAGATGCACTTACGGTTACGGGCATGATCAACGTTGTATGGCAACCAAACAGGTGCAGCAATGTGAAGAGAATCCTGATATGTACGAAATAACGTACATTGGCAACCACACATGCAATGCCAATCTCCCCACTAGGAATGATGAAAGATTGCATGAAGGATCAGATCACGAAATGCAGAATCGGGAGAATGATAGCTTATATAGTCAATTTCGAGGAAAACAGAAGATAATTGATTCTGAAAGCTCATGGTCCTTATTAACTTCAAGTTCTGACAGAAACACTGATACAACATTGTCAAATTCACACGATTATTCTGGCCCCTCGTGA 789 0.4373 MEELVKGQEAATQLKGLLENPIGSEDSLSLSPEELLENVLSSFSQAISIINVSSFQPPPPPPAPHVLGSTSYSMSEDCSVNWNRSEQGQSDERDSHSISVNWNRSQQDRRGSYKRKGKGAPTRTEFSNTTDDGYVWRKYGEKPFPNSKFIRSYFRCTYGYGHDQRCMATKQVQQCEENPDMYEITYIGNHTCNANLPTRNDERLHEGSDHEMQNRENDSLYSQFRGKQKIIDSESSWSLLTSSSDRNTDTTLSNSHDYSGPS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01173 262 MobiDBLite consensus disorder prediction 238 262 - -
Cca05g01173 262 MobiDBLite consensus disorder prediction 198 217 - -
Cca05g01173 262 MobiDBLite consensus disorder prediction 199 216 - -
Cca05g01173 262 SUPERFAMILY WRKY DNA-binding domain 128 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01173 262 Gene3D WRKY domain 117 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g01173 262 SMART WRKY_cls 130 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01173 262 ProSiteProfiles WRKY domain profile. 125 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01173 262 Pfam WRKY DNA -binding domain 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g01173 262 MobiDBLite consensus disorder prediction 83 127 - -
Cca05g01173 262 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 239 IPR044810 GO:0003700
Cca05g01173 262 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 2 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01173 Cca-Chr5 29251658 29260761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01173 1 211 WRKY Transcription Factor Family AT3G56400 37.156 2.46e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g01173 WRKY 1.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01173 - - ccaj:109795541 370.933