Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01172 ATGAAAAGTATGATAAATTTGGAGGAGAGGGTAAGAAAAATCAAGAGTTTGGTCTTAGGGACCGAGACCGAGAGAGTGAAAGATAAGCAAGCAAAAGAGATGATTAGATCTACTGTCTCTGATACAACTGGACTTAGGAAAGGAACATGGACACCAGAGGAGGACCAGATATTGATTGATTATCTCACCAGATATGGCGACTCGAATTGGAGCCTTCTCCCCAAGTTAGCAGGTTTGGAGAGGAGTGGAAAAAGTTGCAGGTCAAGGTGGATGAATTACTTAAGGCCAGGTATGAAAAGAGTGAACAACACCCAAGAAGAAGATGAGACTAACATGGTAATTTGTGGTGAAAGTGAAAGTGAAAGTATGATCTCAGAAAAGGATCGAGTGATAATGGAAGAGCTTGTTAAGGGCCAGGAAGCTGCTACCCAACTCAAGGTTCTTTTAGAGAACCCCATTGGGAGTGAAGACTCTCTCTCACTCTCACCAGAGCAACTCTTGGAGAATGTGCTCTCATCTTTCTCACAAACTATTTCTATCATTAAAGCCTCTTCTTTCCATTCAcctcctcctgctcctgctcctgcacctcACGTTCCCGGTTCCACCAGTTATTCAATGTCTGGAGATTGCAGTGTAAATTGGAACAGATCCCAACAGGGTCAAAGGGATGATGAAAGACTGCATGAAGGATCAGATCACGAAATGCAGAATCGGGAGTATGATAGCTTACATAATCAATTTCGAGGAAAACAGAAAATGGATTTTGAAAGATCATGGTCCTTATTAACTACAAGTTCTGACAGAAACACTGATATGTCAAATTCACACGACTATTCTGGTCCCTCTTAA 852 0.3991 MKSMINLEERVRKIKSLVLGTETERVKDKQAKEMIRSTVSDTTGLRKGTWTPEEDQILIDYLTRYGDSNWSLLPKLAGLERSGKSCRSRWMNYLRPGMKRVNNTQEEDETNMVICGESESESMISEKDRVIMEELVKGQEAATQLKVLLENPIGSEDSLSLSPEQLLENVLSSFSQTISIIKASSFHSPPPAPAPAPHVPGSTSYSMSGDCSVNWNRSQQGQRDDERLHEGSDHEMQNREYDSLHNQFRGKQKMDFERSWSLLTTSSDRNTDMSNSHDYSGPS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01172 283 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Cca05g01172 283 Gene3D - 39 100 - -
Cca05g01172 283 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Cca05g01172 283 MobiDBLite consensus disorder prediction 220 250 - -
Cca05g01172 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 98 IPR017930 -
Cca05g01172 283 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 34 110 - -
Cca05g01172 283 MobiDBLite consensus disorder prediction 201 219 - -
Cca05g01172 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 34 110 - -
Cca05g01172 283 MobiDBLite consensus disorder prediction 187 250 - -
Cca05g01172 283 SMART sant 46 96 IPR001005 -
Cca05g01172 283 CDD SANT 49 94 IPR001005 -
Cca05g01172 283 MobiDBLite consensus disorder prediction 263 283 - -
Cca05g01172 283 SUPERFAMILY Homeodomain-like 48 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01172 Cca-Chr5 29244366 29247338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01172 34 110 MYB Transcription Factor Family AT5G65230 62.338 2.82e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g01172 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01172 K09422 - ccaj:109795541 151.369