Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01170 ATGCCGAATCCCGAGGGTGACCGCGGGCAGCAAAACCGGGCACGGGCACGGGCCTCCACGTCAGCGGGGGTTCGGGCGCGTGTGTCGCTGCGGCAGTTGCTGCGCGTGGCGTCGGTGGCCAGCGGGATTCAGTTCGGTTGGGCTTTGCAGTTATCTCTTCTGACGCCGTATGTTCAGCAGCTGGGGATTCCGCACCAATGGGCCAGCATCATCTGGCTCTGCGGGCCGGTCTCGGGCCTCTTCGTGCAGCCCTTGGTGGGCCACATGAGCGACCGCTGCACCAGCCGCTTCGGCCGCCGCAAACCCTTCATCCTCGCCGGCGCGGTTGCGATCGTTGTCGCGGTTGTCGTCATCGGCTACGCCGCTGACATCGGCTGGCTCCTCGGCGACACCGAGGACTACCGCCCCGCCGCCATCGCCGTCTTTATCATCGGCTTTTGGATCCTCGACGTCGCCAACAACGTCACGCAAGGTCCCTGTCGAGCCCTGCTCGGTGATCTCACTAGCAAGGATCCTCGGAGGACACGTGTTGCAAATGCATATTACTCACTATTTATGGCCATCGGTAACATTCTTGGCTATGCAACTGGATCATACAGTGGTTGGTACAAGATTTTTACTTTTGCGCTTTCCCCAGCTTGCACAATTAGTTGTGCGAATCTCAAGTCTGCTTTCTTTCTTGACATTGCTTTCATTGCGGTCACAACATATATCAGCATCATGGCAGCTCATGAAGTGCCTCTAAATTCAAGTGAGGCAGCCCATGCTGAAGCAGGGGCAGGGGAGTCAGGTAGTGCAGAAGAAGCTTTCATGTGGGAATTATTTGGGACATTCAAATATTTTTCAACCCCTGTATGGGTAATTCTGTCTGTTACTGCTCTGACATGGATTGGATGGTTCCCATTTACTCTCTTTGATACCGATTGGATGGGTCGAGAGATTTATGGTGGTGATCCAAATCAAGGCCTTGTTTATGATACTGGAGTTAGAATGGGAGCACTTGGTTTGTTACTTAATTCAGTTGTTCTTGCATTAACATCATTGTTCATGGAGAGGCTATGCAGGAAGAGAGGGGCTGGTTTTGTGTGGGGAATCTCCAATATTATGATGGCTGTTTGCTTTCTTGCAATGCTAGTAGTAACCTATGTGGCAAATAGCATGGGTTATGTAGGCAAAGATCTACCACCAGCTAGCATTGTGATTGCTGCGTTGGTTATCTTTACCATTCTTGGGTTTCCACTGGCTATAACTTACAGTGTTCCATATGCCTTAATTTCCACGCATATTGAGTCACTAGGACTTGGCCAAGGGTTATCAATGGGTGTCCTAAATCTGGCAATAGTGATCCCACAGATAATAGTGTCCCTGGGAAGTGGACCGTGGGATCAACTATTTGGTGGAGGAAACTCCCCAGCCTTTGTTGTGGCAGCTGTTTCAGCCCTTATCAGTGGACTCATAGCTGTCTTGGCAATTCCTCGATCTCAAAAGGCTCGAAGCCGTGTATGA 1506 0.5139 MPNPEGDRGQQNRARARASTSAGVRARVSLRQLLRVASVASGIQFGWALQLSLLTPYVQQLGIPHQWASIIWLCGPVSGLFVQPLVGHMSDRCTSRFGRRKPFILAGAVAIVVAVVVIGYAADIGWLLGDTEDYRPAAIAVFIIGFWILDVANNVTQGPCRALLGDLTSKDPRRTRVANAYYSLFMAIGNILGYATGSYSGWYKIFTFALSPACTISCANLKSAFFLDIAFIAVTTYISIMAAHEVPLNSSEAAHAEAGAGESGSAEEAFMWELFGTFKYFSTPVWVILSVTALTWIGWFPFTLFDTDWMGREIYGGDPNQGLVYDTGVRMGALGLLLNSVVLALTSLFMERLCRKRGAGFVWGISNIMMAVCFLAMLVVTYVANSMGYVGKDLPPASIVIAALVIFTILGFPLAITYSVPYALISTHIESLGLGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNSPAFVVAAVSALISGLIAVLAIPRSQKARSRV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01170 501 PANTHER SUGAR TRANSPORTER 10 500 - -
Cca05g01170 501 TIGRFAM GPH_sucrose: sucrose/H+ symporter 28 495 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cca05g01170 501 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g01170 501 Pfam MFS/sugar transport protein 48 431 - -
Cca05g01170 501 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 10 500 - -
Cca05g01170 501 CDD MFS_SLC45_SUC 33 489 - -
Cca05g01170 501 Gene3D MFS general substrate transporter like domains 282 499 IPR036259 -
Cca05g01170 501 Gene3D MFS general substrate transporter like domains 29 251 IPR036259 -
Cca05g01170 501 SUPERFAMILY MFS general substrate transporter 32 496 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01170 Cca-Chr5 29216645 29225039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01170 1 495 Sucrose Transporter Gene Family AT1G09960 68.379 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01170 K15378 - gmx:100820483 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01170 05 29216645 29225039 Cca05g01170 05 29216645 29225039 ECH